Bachmann_MSB2011

[dilpath]

Users have reported that they are unable to reproduce paper figures with the current version in our collection. The problem should be updated to match the implementation in Data2Dynamics.

https://github.com/Data2Dynamics/d2d/tree/master/arFramework3/Examples/Bachmann_MSB2011

For now, we should remove it from our collection.

[FFroehlich]

In https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010322#sec023 I did an exhaustive comparison to data2dynamics and found that our implementation matches what they have. If the paper figures don't match, I suspect there might be an issue with the d2d implementation.

[stephanmg]

For us a very poor fit was reached, and that manifested in the visualizations (without using a PEtab visualization specification file).

I will dig again into the issue, and provide more details here then.