CodeEntropy/.github/workflows/pr.yaml at main · CCPBioSim/CodeEntropy · GitHub

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name: Pull Request CI

on:
  pull_request:

permissions:
  contents: read

concurrency:
  group: pr-ci-${{ github.ref }}
  cancel-in-progress: true

jobs:
  unit:
    name: Unit
    uses: CCPBioSim/.github/.github/workflows/ci-test-python.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
    permissions:
      contents: read
      checks: write
      statuses: write
      pull-requests: write
    with:
      package: CodeEntropy
      lowest-dependencies-check: true
      test-path: tests/unit
      os: '["ubuntu-24.04", "macos-26", "windows-2025-vs2026"]'
      timeout-minutes: 25

  discover-systems:
    name: Discover regression systems
    runs-on: ubuntu-26.04
    outputs:
      systems: ${{ steps.set-systems.outputs.systems }}

    steps:
      - name: Checkout
        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8

      - name: Set up Python 3.14
        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405
        with:
          python-version: "3.15"

      - name: Install testing dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[testing]

      - name: Discover systems
        id: set-systems
        run: |
          SYSTEMS=$(python -m tests.regression.list_systems)
          echo "systems=$SYSTEMS" >> "$GITHUB_OUTPUT"

  regression-quick:
    name: Regression fast • ${{ matrix.system }}
    needs: discover-systems
    runs-on: ubuntu-26.04
    timeout-minutes: 35

    strategy:
      fail-fast: false
      matrix:
        system: ${{ fromJson(needs.discover-systems.outputs.systems) }}

    steps:
      - name: Checkout
        uses: actions/checkout@8e8c483db84b4bee98b60c0593521ed34d9990e8

      - name: Set up Python 3.14
        uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405
        with:
          python-version: "3.15"

      - name: Install testing dependencies
        run: |
          python -m pip install --upgrade pip
          python -m pip install -e .[testing]

      - name: Run fast regression tests
        run: |
          python -m pytest tests/regression \
            -m "not slow" \
            --system "${{ matrix.system }}" \
            -vv \
            --durations=20

      - name: Upload artifacts on failure
        if: failure()
        uses: actions/upload-artifact@cf430e030ddbb5b0abf93d22962f4752f3646cd9 # v7.0.2
        with:
          name: quick-regression-failure-${{ matrix.system }}
          path: |
            .testdata/**
            /tmp/pytest-of-*/pytest-*/**

  docs:
    name: Docs
    needs: unit
    uses: CCPBioSim/.github/.github/workflows/ci-docs.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
    permissions:
      contents: read
    with:
      timeout-minutes: 25

  pre-commit:
    name: Pre-commit
    needs: unit
    uses: CCPBioSim/.github/.github/workflows/ci-pre-commit.yaml@f4cec1ba490b4461bfbcfd6362a8587678908a7d # 0.12.0
    permissions:
      contents: read
    with:
      timeout-minutes: 15