From 8bb6295b6aab1faa38e29d49a8342856b98b9d78 Mon Sep 17 00:00:00 2001 From: martenson <1814954+martenson@users.noreply.github.com> Date: Wed, 28 Oct 2026 16:00:43 +0000 Subject: [PATCH] output of get_iwc_tools.py --- .../annotation.yml.lock | 9 ++ .../assembly.yml.lock | 7 ++ .../chemicaltoolbox.yml.lock | 3 + .../convert_formats.yml.lock | 4 + .../deeptools.yml.lock | 1 + .../evolution.yml.lock | 1 + .../fasta_fastq.yml.lock | 4 + .../graph_display_data.yml.lock | 3 + .../imaging.yml.lock | 1 + .../machine_learning.yml.lock | 8 ++ .../mapping.yml.lock | 2 + .../metabolomics.yml.lock | 19 ++++ .../metagenomic_analysis.yml | 26 ++++++ .../metagenomic_analysis.yml.lock | 87 +++++++++++++++++++ .../multiple_alignments.yml.lock | 1 + .../nanopore.yml.lock | 1 + .../proteomics.yml.lock | 2 + .../quality_control.yml.lock | 1 + .../rna_analysis.yml.lock | 2 + .../single_cell.yml.lock | 9 ++ .../text_manipulation.yml.lock | 1 + .../transcriptomics.yml.lock | 1 + .../variant_calling.yml.lock | 6 ++ .../virology.yml.lock | 1 + 24 files changed, 200 insertions(+) diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock index df4ca31..f59e446 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/annotation.yml.lock @@ -11,6 +11,7 @@ tools: - name: repeat_masker owner: bgruening revisions: + - 31763a56f1d7 - ba6d2c32f797 tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -152,6 +153,7 @@ tools: - 31f58ec0459a - 3f3e247c053d - c2ef298da409 + - d8b0de0554a9 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: blastxml_to_gapped_gff3 @@ -176,6 +178,7 @@ tools: - 9bc5cdefb090 - 9cd341095afd - aff5135563c6 + - b6236eb1a50b tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: socru @@ -459,6 +462,7 @@ tools: revisions: - 573cfe217474 - 7844dbe4f8e2 + - 96112e4c5e26 tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: isescan @@ -478,6 +482,7 @@ tools: owner: iuc revisions: - 1942e86e2ee1 + - 25f3b474ca6f - 292eea8defa7 tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -497,6 +502,7 @@ tools: - name: argnorm owner: iuc revisions: + - 9125d3f45f4d - d8e95a03321a tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -504,6 +510,7 @@ tools: owner: iuc revisions: - 876d26806584 + - a43aa384ead4 - bd5630d401cd tool_panel_section_id: annotation tool_panel_section_label: Annotation @@ -526,6 +533,7 @@ tools: owner: iuc revisions: - 2b9b64614d0c + - c8913c72ee87 - f421fd0c42ea - fc7334661489 tool_panel_section_id: annotation @@ -571,6 +579,7 @@ tools: owner: iuc revisions: - dd2d60b55e0d + - e301c523e83d tool_panel_section_id: annotation tool_panel_section_label: Annotation - name: remove_terminal_stop_codons diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock index d9c4cea..d269d1d 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/assembly.yml.lock @@ -262,6 +262,7 @@ tools: owner: iuc revisions: - 331109486d58 + - eb04ae2c1f21 - ee17a294d3a3 tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -283,6 +284,7 @@ tools: revisions: - 1b1cf0c96501 - a3b35edea53a + - cbc516cee202 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: megahit @@ -295,6 +297,7 @@ tools: owner: nml revisions: - 04d81e5f25e9 + - 434f2a6c3ade - f192c2fbe13f tool_panel_section_id: assembly tool_panel_section_label: Assembly @@ -338,6 +341,7 @@ tools: revisions: - 0346286a3b0a - 056f86469460 + - 0d0e8d0691c8 - 7087d9a23185 - 9c942221e135 - bd07b0d0f568 @@ -351,6 +355,7 @@ tools: - 36ce83a739f2 - 408ece2e4647 - 8e422c873d02 + - 9491362ac1cd tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: genomescope @@ -376,6 +381,7 @@ tools: owner: iuc revisions: - 3d1d241ceff2 + - b507ad3fe6ce tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: racon @@ -389,6 +395,7 @@ tools: owner: iuc revisions: - 321ceb58023e + - d0f5d9821854 tool_panel_section_id: assembly tool_panel_section_label: Assembly - name: vgp_split_agp diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml.lock index 93ac5cc..df0d1f8 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/chemicaltoolbox.yml.lock @@ -669,6 +669,7 @@ tools: - name: qcxms_neutral_run owner: recetox revisions: + - 3862d7fc6f7e - 475bbef634d4 - c40784ec1fdd tool_panel_section_id: chemicaltoolbox @@ -676,6 +677,7 @@ tools: - name: qcxms_production_run owner: recetox revisions: + - 1c7e10729065 - 69ba95cdcff2 - cbe34f060712 tool_panel_section_id: chemicaltoolbox @@ -685,5 +687,6 @@ tools: revisions: - 0109f244d25a - 720958b09af4 + - d488b9391103 tool_panel_section_id: chemicaltoolbox tool_panel_section_label: ChemicalToolBox diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/convert_formats.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/convert_formats.yml.lock index d6ee5e4..dc6f7a6 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/convert_formats.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/convert_formats.yml.lock @@ -60,6 +60,7 @@ tools: - name: msconvert owner: galaxyp revisions: + - 252d185267fc - 28ffaaa5739f - 331a50e8fd2f - 6153e8ada1ee @@ -167,6 +168,7 @@ tools: - name: tooldistillator owner: iuc revisions: + - 4ac5179f245c - 6c56786c9d1a - 740e1702cb22 - 9f1c8dc0253e @@ -176,6 +178,7 @@ tools: - name: tooldistillator_summarize owner: iuc revisions: + - 3a66889baf43 - 3d0223265277 - 95a71120949f - e58dc53cb0c7 @@ -188,6 +191,7 @@ tools: - 601575b847c0 - 77f67ddd89d6 - ab55af10f1ff + - db7c0226ebd9 tool_panel_section_id: convert_formats tool_panel_section_label: Convert Formats - name: biom_convert diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/deeptools.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/deeptools.yml.lock index 3dbbf5c..0c22695 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/deeptools.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/deeptools.yml.lock @@ -20,6 +20,7 @@ tools: owner: bgruening revisions: - 0e49b109abc2 + - 7dcc58a57476 tool_panel_section_id: deeptools tool_panel_section_label: deepTools - name: deeptools_bam_pe_fragmentsize diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/evolution.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/evolution.yml.lock index 138d1b6..94d589f 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/evolution.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/evolution.yml.lock @@ -8,5 +8,6 @@ tools: revisions: - 18a61a9c1601 - 6bbd30d58cf4 + - '856173762903' tool_panel_section_id: evolution tool_panel_section_label: Evolution diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock index e398ebb..555dab7 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/fasta_fastq.yml.lock @@ -328,6 +328,7 @@ tools: revisions: - 0d9d8de82304 - 0e0b003c711f + - b441f51f88b7 - c669e8550c46 - d35d114c26a7 tool_panel_section_id: fasta_fastq @@ -369,6 +370,7 @@ tools: owner: pjbriggs revisions: - 75a3b8da8e76 + - 771554c05a0b - b9aaed85cbd1 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -412,6 +414,7 @@ tools: - 280f0db52654 - 37d67c252fed - aef1eea2058c + - df19b13caeb8 - f0409baac2cd tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ @@ -442,6 +445,7 @@ tools: - name: seqkit_split2 owner: iuc revisions: + - 0a429822c6a5 - 0c7fadfe52e2 tool_panel_section_id: fasta_fastq tool_panel_section_label: FASTA/FASTQ diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/graph_display_data.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/graph_display_data.yml.lock index 8555b3f..a276cd6 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/graph_display_data.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/graph_display_data.yml.lock @@ -73,6 +73,7 @@ tools: - 26f2fe7e53a1 - 9ec9c22767c8 - c4fb391275a0 + - cfc412b91a57 - ff02cf8f66f0 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -86,6 +87,7 @@ tools: - name: jbrowse owner: iuc revisions: + - 1483285bdb7a - a6e57ff585c0 tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data @@ -93,5 +95,6 @@ tools: owner: fubar revisions: - bd903fbbc26e + - dd032687675c tool_panel_section_id: graph_display_data tool_panel_section_label: Graph/Display Data diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/imaging.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/imaging.yml.lock index babd946..e226b72 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/imaging.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/imaging.yml.lock @@ -42,6 +42,7 @@ tools: - name: bfconvert owner: imgteam revisions: + - f0242f99a175 - fa8ce46a95bb - fcadded98e61 tool_panel_section_id: imaging diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/machine_learning.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/machine_learning.yml.lock index 51484e8..19abd35 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/machine_learning.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/machine_learning.yml.lock @@ -12,11 +12,13 @@ tools: owner: bgruening revisions: - 549937c7349c + - d6fccdb87bf3 tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning - name: sklearn_to_categorical owner: bgruening revisions: + - 722379be2338 - 791fa244e44d - f86c0419af43 tool_panel_section_id: machine_learning @@ -25,6 +27,7 @@ tools: owner: bgruening revisions: - 6f7e3901728d + - e3d00d324fb7 - e8e5736b632d tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning @@ -33,12 +36,14 @@ tools: revisions: - 01131463df86 - 08b52ffcd2b4 + - fb731872d453 tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning - name: keras_model_builder owner: bgruening revisions: - 98aeca624881 + - ad11e219bd5a - beeeda757eba tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning @@ -47,6 +52,7 @@ tools: revisions: - 19407b7f815c - aeee74692508 + - efa16475990a tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning - name: model_prediction @@ -54,11 +60,13 @@ tools: revisions: - 3dd539570a60 - 475b5171945f + - 8ef3ef591dc8 tool_panel_section_id: machine_learning tool_panel_section_label: Machine Learning - name: ml_visualization_ex owner: bgruening revisions: + - 553b147da4e9 - 5f9c0e99016f - 9276346ed061 tool_panel_section_id: machine_learning diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/mapping.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/mapping.yml.lock index 4619ff5..c45fdf0 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/mapping.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/mapping.yml.lock @@ -111,6 +111,7 @@ tools: revisions: - 53255f6eecfc - 55c9ac3aa8f4 + - 6e8618432bea - d8d32326fbfb - de21b616f03a tool_panel_section_id: mapping @@ -128,6 +129,7 @@ tools: - name: rna_starsolo owner: iuc revisions: + - 7f694df20f73 - a00cceb45700 - a2f232ff85ed tool_panel_section_id: mapping diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/metabolomics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/metabolomics.yml.lock index 7cd10e5..a9cd0d5 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/metabolomics.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/metabolomics.yml.lock @@ -179,6 +179,7 @@ tools: owner: ethevenot revisions: - e7c5811ec12f + - f19a3307db9b tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: massbank_ws_searchspectrum @@ -234,6 +235,7 @@ tools: - name: mfassignr_kmdnoise owner: recetox revisions: + - 61287368a95d - a7a823839ae3 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -241,11 +243,13 @@ tools: owner: recetox revisions: - 9654573e6889 + - df906aafac0d tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: mfassignr_snplot owner: recetox revisions: + - 8e5acbf5589b - f19c0631b9e5 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -253,11 +257,13 @@ tools: owner: recetox revisions: - 1c199c3d5993 + - d512c47f721d tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: mfassignr_mfassigncho owner: recetox revisions: + - 4d10bce8c07e - da64d663694b tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -265,17 +271,20 @@ tools: owner: recetox revisions: - 6c7b17d38a1d + - d3dfaa7496a2 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: mfassignr_findrecalseries owner: recetox revisions: - 1b4881c150cc + - eea4113efc99 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: mfassignr_recal owner: recetox revisions: + - 91af26deeb98 - cfcf45ba58be tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -283,29 +292,34 @@ tools: owner: recetox revisions: - 22c80f584bb1 + - d79690df2e83 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: msnbase_readmsdata owner: lecorguille revisions: - 35b6fe4d481c + - 788a4bac4a11 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_plot_chromatogram owner: lecorguille revisions: - 9291271ec4d9 + - d26d886f48a3 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_xcmsset owner: lecorguille revisions: - 3990a65b45a4 + - 734dfb2af03a tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_merge owner: lecorguille revisions: + - 8372531e6c92 - ae28a753a6f8 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -313,12 +327,14 @@ tools: owner: lecorguille revisions: - 3820e3f3b1cb + - a151d2cf27fb tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: xcms_retcor owner: lecorguille revisions: - 33c0ca93f3ee + - ba20f926a460 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: intensity_checks @@ -331,6 +347,7 @@ tools: - name: xcms_fillpeaks owner: lecorguille revisions: + - 564d6ab0cf18 - a8d866a71ba1 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics @@ -338,12 +355,14 @@ tools: owner: lecorguille revisions: - 75a1b3f7bacc + - abc7c44ae8f7 tool_panel_section_id: metabolomics tool_panel_section_label: Metabolomics - name: table_pandas_rename_column owner: recetox revisions: - 3f54cd56a65e + - 63273927b45d - 761f8ab8fdb6 - 8537763e4713 tool_panel_section_id: metabolomics diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml b/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml index 3ec505b..66f2bf7 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml @@ -140,3 +140,29 @@ tools: owner: bgruening - name: comebin owner: iuc +- name: kneaddata + owner: iuc +- name: metaphlan + owner: iuc +- name: motus + owner: bgruening +- name: samestr + owner: iuc +- name: phyloseq_add_rank_names + owner: iuc +- name: ampvis2_export_otu + owner: iuc +- name: ampvis2_subset_samples + owner: iuc +- name: ampvis2_heatmap + owner: iuc +- name: decontam + owner: iuc +- name: ampvis2_ordinate + owner: iuc +- name: mmuphin + owner: iuc +- name: maaslin3 + owner: iuc +- name: phyloseq_tax_glom + owner: iuc diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml.lock index 7bbe812..6727c9c 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/metagenomic_analysis.yml.lock @@ -27,6 +27,7 @@ tools: owner: iuc revisions: - 43f9ca23c132 + - 9c102da4ca13 - 9de5319ad2db tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -217,6 +218,7 @@ tools: - name: kraken2 owner: iuc revisions: + - 1a54e1867fd4 - 20e2f64aa1fe - 241a78eb2935 - cbe396d9773e @@ -294,6 +296,7 @@ tools: - 73b667038f46 - 840d407fe8e5 - 8c957deb8a68 + - c91014de79d2 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: checkm_lineage_wf @@ -307,6 +310,7 @@ tools: owner: iuc revisions: - 28d740f2c0b0 + - 66919d81c4d1 - d9b724b4a136 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -321,6 +325,7 @@ tools: - name: krakentools_extract_kraken_reads owner: iuc revisions: + - 04eb022d7409 - 3b1963f729cb - f329328da134 tool_panel_section_id: metagenomic_analysis @@ -410,12 +415,14 @@ tools: - name: mash_paste owner: iuc revisions: + - 618969c1d8e1 - e0c0fda064eb tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis - name: mash_dist owner: iuc revisions: + - 45fb62c28c9b - c932095af671 tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis @@ -476,7 +483,87 @@ tools: - name: comebin owner: iuc revisions: + - 7e66a24282a7 - cd1d8332bc04 - ddfb9c10740a tool_panel_section_id: metagenomic_analysis tool_panel_section_label: Metagenomic Analysis +- name: kneaddata + owner: iuc + revisions: + - 10f8abc1fbdf + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: metaphlan + owner: iuc + revisions: + - 1f688befbcdf + - 56ff60ec416d + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: motus + owner: bgruening + revisions: + - b2b7a3897ef6 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: samestr + owner: iuc + revisions: + - 66378faa1313 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: phyloseq_add_rank_names + owner: iuc + revisions: + - bdbd2aab96bb + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: ampvis2_export_otu + owner: iuc + revisions: + - 68df6f185bb7 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: ampvis2_subset_samples + owner: iuc + revisions: + - 75a2a80e5ad0 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: ampvis2_heatmap + owner: iuc + revisions: + - 4a7449938377 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: decontam + owner: iuc + revisions: + - d3ae5b16a4d8 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: ampvis2_ordinate + owner: iuc + revisions: + - ad46c4548d8f + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: mmuphin + owner: iuc + revisions: + - b8d8b2210ecc + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: maaslin3 + owner: iuc + revisions: + - cf8ee3834c36 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis +- name: phyloseq_tax_glom + owner: iuc + revisions: + - bcc827195b65 + tool_panel_section_id: metagenomic_analysis + tool_panel_section_label: Metagenomic Analysis diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/multiple_alignments.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/multiple_alignments.yml.lock index 2249401..bf86f62 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/multiple_alignments.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/multiple_alignments.yml.lock @@ -67,6 +67,7 @@ tools: - name: mmseqs2_easy_linclust_clustering owner: iuc revisions: + - 0a60a6d93d3b - 1bc9b91a91fd - b174c3405549 tool_panel_section_id: multiple_alignments diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/nanopore.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/nanopore.yml.lock index c9a9090..bf39586 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/nanopore.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/nanopore.yml.lock @@ -209,6 +209,7 @@ tools: owner: iuc revisions: - 2a9afed42353 + - 8de9d54f7a96 - 9eab750c367d - a02b8b3f5a0c tool_panel_section_id: nanopore diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/proteomics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/proteomics.yml.lock index 7923c1f..fde1fbb 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/proteomics.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/proteomics.yml.lock @@ -369,6 +369,7 @@ tools: revisions: - 3ec27b4cee7c - a6ff76e057fd + - c9b13d4069c8 tool_panel_section_id: proteomics tool_panel_section_label: Proteomics - name: rawtools @@ -606,6 +607,7 @@ tools: owner: galaxyp revisions: - 9c52362ae7bb + - fce1301d386c tool_panel_section_id: proteomics tool_panel_section_label: Proteomics - name: pepquery2 diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/quality_control.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/quality_control.yml.lock index e4a5184..de048bd 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/quality_control.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/quality_control.yml.lock @@ -18,6 +18,7 @@ tools: - 3dd49be3f7d3 - 5e33b465d8d5 - 862943c10425 + - 94b6bea727ae - 97255f6fdf7e - 9a913cdee30e - a7e081ceb76a diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/rna_analysis.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/rna_analysis.yml.lock index e8d5bb9..be523df 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/rna_analysis.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/rna_analysis.yml.lock @@ -700,6 +700,7 @@ tools: owner: iuc revisions: - 92198ab2345f + - a356a3e21032 - cbf488da3b2c tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis @@ -719,6 +720,7 @@ tools: owner: nilesh revisions: - 27e16a30667a + - 5bc075714a8b tool_panel_section_id: rna_analysis tool_panel_section_label: RNA Analysis - name: featurecounts diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/single_cell.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/single_cell.yml.lock index 1350908..a2415dc 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/single_cell.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/single_cell.yml.lock @@ -11,6 +11,7 @@ tools: - name: dropletutils owner: iuc revisions: + - 10d928447114 - a9caad671439 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -106,6 +107,7 @@ tools: - 7e8c677a7b71 - 9ef202055d5c - be1fdce914c6 + - c4209ea387d4 - e6a8d5fdca85 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell @@ -136,6 +138,7 @@ tools: - name: anndata_import owner: iuc revisions: + - 6f143dfe902a - 923dcc644832 - d0a337ddf062 - d330b3082107 @@ -145,6 +148,7 @@ tools: owner: iuc revisions: - 0bf7fddf90c7 + - 14c576ea6148 - 9301df6f892d - afe044e6bc93 tool_panel_section_id: single_cell @@ -153,12 +157,14 @@ tools: owner: iuc revisions: - 27c054e8d949 + - a8d291df615d - d86cb2ce311b tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_filter owner: iuc revisions: + - 2e6029e47eb5 - 8cb783c81905 - 92a189c299d4 tool_panel_section_id: single_cell @@ -166,6 +172,7 @@ tools: - name: scanpy_normalize owner: iuc revisions: + - 2b6498d4c8c6 - 56c0d4acef02 - e639abb0de92 tool_panel_section_id: single_cell @@ -183,6 +190,7 @@ tools: revisions: - 38db3fef7aad - 49ce1315722c + - 795751257d82 tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: scanpy_plot @@ -190,6 +198,7 @@ tools: revisions: - 0185bd174ea0 - 16a1c3122996 + - 7f478b3258ec tool_panel_section_id: single_cell tool_panel_section_label: Single-cell - name: velocyto_cli diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/text_manipulation.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/text_manipulation.yml.lock index 7762206..b069a0c 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/text_manipulation.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/text_manipulation.yml.lock @@ -103,6 +103,7 @@ tools: owner: iuc revisions: - 2040e4c2750a + - 6428adb323eb tool_panel_section_id: text_manipulation tool_panel_section_label: Text Manipulation - name: column_order_header_sort diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/transcriptomics.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/transcriptomics.yml.lock index cc6eb7f..8d80b07 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/transcriptomics.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/transcriptomics.yml.lock @@ -6,6 +6,7 @@ tools: - name: decoupler_pseudobulk owner: ebi-gxa revisions: + - 09c833d9b03b - 2557d7869e78 - ef054892d47f tool_panel_section_id: celltypescan diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/variant_calling.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/variant_calling.yml.lock index 6f47175..377f27a 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/variant_calling.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/variant_calling.yml.lock @@ -114,6 +114,7 @@ tools: - name: lofreq_filter owner: iuc revisions: + - 3e0e44d971d5 - 7dfca164d2e3 - 950d1d49d678 tool_panel_section_id: variant_calling @@ -154,6 +155,7 @@ tools: - name: lofreq_viterbi owner: iuc revisions: + - 3330ebe7c0c7 - aa35ee7f3ab2 - af7e416d8176 tool_panel_section_id: variant_calling @@ -168,6 +170,7 @@ tools: owner: iuc revisions: - 354b534eeab7 + - 4165b712b569 - 426d707dfc47 - 971e07ca4456 tool_panel_section_id: variant_calling @@ -497,11 +500,13 @@ tools: revisions: - 8aa352093d73 - 9a260f6fab93 + - b75e49f360de tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: lofreq_call owner: iuc revisions: + - 14af3b671440 - b11e8e9c23bf - e1461b5c52a0 tool_panel_section_id: variant_calling @@ -512,6 +517,7 @@ tools: - 06eaadeffb7d - 2c372041ed8c - 403553ae19f6 + - b79aae13e613 tool_panel_section_id: variant_calling tool_panel_section_label: Variant Calling - name: freebayes diff --git a/galaxy-qa1.galaxy.cloud.e-infra.cz/virology.yml.lock b/galaxy-qa1.galaxy.cloud.e-infra.cz/virology.yml.lock index 27e7e93..732354f 100644 --- a/galaxy-qa1.galaxy.cloud.e-infra.cz/virology.yml.lock +++ b/galaxy-qa1.galaxy.cloud.e-infra.cz/virology.yml.lock @@ -45,5 +45,6 @@ tools: revisions: - 290071465e6e - 877e80114d25 + - a56510b3c4ed tool_panel_section_id: virology tool_panel_section_label: Virology