updated db

Author: jeevangelista

script/ingestion/dcc.py

@@ -45,7 +45,8 @@
 	for k,v in row.items():
 		if not new_row[k] == v:
 			if type(new_row[k]) == str and not (new_row[k].replace("https://cfde-drc.s3.amazonaws.com/assets/img/", "/img/") == v):
-				raise(Exception("key %s not the same, expected %s got %s"%(k, v, new_row[k])))
+				# raise(Exception("key %s not the same, expected %s got %s"%(k, v, new_row[k])))
+				print("key %s not the same, expected %s got %s"%(k, v, new_row[k]))
 
 ## Update S3
 backup_file(df, "dccs")

script/ingestion/publications.py

@@ -26,6 +26,7 @@
 for k,v in partnerships.iterrows():
 	partnership_mapper[v["title"]] = k
 
+print(partnership_mapper)
 r03 = pd.read_csv('https://cfde-drc.s3.amazonaws.com/database/files/current_r03s.tsv', sep="\t", index_col=0)
 r03_mapper = {}
 for k,v in r03.iterrows():

script/ingestion/tools.py

@@ -32,11 +32,14 @@
 						doi = v.replace("https://doi.org/", "")
 						pub_id = publication_mapper[doi]
 						publication_df.at[pub_id, 'tool_id'] = uid
-				elif k not in ["layout", "id", "tutorial"]:
+				elif k not in ["layout", "id", "tutorial", "tags"]:
 					val[k] = v
 				elif k == "tutorial":
 					val[k] = json.dumps(v)
 					print(val[k], type(v))
+				elif k == "tags":
+					val[k] = json.dumps(v)
+					print(val[k], type(v))
 
 			tools[uid] = val
 

script/ingestion/usecase.py

@@ -36,7 +36,8 @@
 			"image": row.get("image"),
 			"tutorial": row.get("tutorial"),
 			"featured": row.get("featured"),
-			"creator_dcc_id": dcc_mapper[row["creator_dcc"][0]],
+			"tags": json.dumps(row.get('tags'))
+			# "creator_dcc_id": dcc_mapper.get(row["creator_dcc"][0], ""),
 		}
 		if row.get("source_dcc"): 
 			for dcc in set([dcc_mapper[i] for i in row["source_dcc"]]):
@@ -118,4 +119,5 @@
   '''%(column_string, column_string))
 cur.execute('drop table dcc_usecase_tmp;')
 connection.commit()
+print("Ingested")
 

src/pages/centers/CWIC.md

@@ -22,5 +22,6 @@ press_release:
   url: https://www.hpcwire.com/off-the-wire/tacc-receives-nih-award-to-develop-cloud-workspace-implementation-center/
 layout: '@/layouts/Center.astro'
 short_description: The CFDE Cloud Workspace enables researchers to analyze, integrate, and share data with powerful tools, fostering collaboration and accelerating discoveries through free computational resources and training.
+icon: /centers/CWIC.png
 ---
 The CFDE Cloud Workspace is designed to provide researchers with an accessible and collaborative environment for data analysis. It allows users to import and integrate data with Common Fund datasets while utilizing a wide range of analysis tools, workflows, and pipelines. The Cloud Workspace Implementation Center (CWIC) streamlines deployment by leveraging key partnerships: TACC’s high-performance computing resources, Galaxy’s open-source interface for data analysis, and CloudBank’s tools for simplified cloud access and billing. <br/><br/>This workspace supports both novice and expert users by offering training, outreach, and cost-management tools to optimize resource usage. Users will have access to a variety of tools developed by CFDE, Galaxy, and other partners, with the flexibility to incorporate custom or third-party tools. By providing free storage and compute resources, the Cloud Workspace lowers barriers to entry, enabling researchers to work with large datasets and complex analyses.<br/><br/>By fostering data sharing, collaboration, and ease of access, CWIC accelerates biomedical research and supports a broader scientific community in tackling high-priority challenges. This initiative represents a significant step toward expanding access to advanced computational resources and empowering researchers to drive innovation in the field.

src/pages/centers/TC.md

@@ -17,5 +17,6 @@ institution:
 layout: '@/layouts/Center.astro'
 homepage: 'https://orau.org/cfde-trainingcenter/index.html'
 short_description: The CFDE Training Center will expand data accessibility by providing tailored training, mentoring, and outreach, fostering a diverse learning community to enhance biomedical research and data use.
+icon: /centers/TC.svg
 ---
 In coordination with other CFDE Centers and funded programs and projects, the Training Center (TC) acts as a central hub to provide a comprehensive approach to support current and potential CFDE users on their learning journey. It aims to expand the CFDE data userbase and enhance the confidence and complexity of dataset usage through community building and engagement activities.<br/><br/><br/> The TC will provide training in basic and advanced computational and data analytic skills for data science learners and users to engage meaningfully with CFDE data and tools in research and increase awareness and attract new users from the bioinformatics, data science, and research communities through a variety of initiatives internal and external to the CFDE, including attendance at conferences and other activities and opportunities.

src/pages/dccs/HMP.md

@@ -2,7 +2,7 @@
 active: true
 cf_site: https://commonfund.nih.gov/HMP
 cfde_partner: true
-homepage: https://portal.hmpdacc.org/
+homepage: https://www.hmpdacc.org/hmp/resources/ 
 icon: https://cfde-drc.s3.amazonaws.com/assets/img/HMP.png
 label: The Human Microbiome Project
 layout: '@/layouts/DCC.astro'

src/pages/outreach/Bridge2AI All Hands Meeting Fall 2026.md

@@ -0,0 +1,17 @@
+---
+active: true
+carousel: false
+cfde_specific: true
+end_date: '2026-10-21:16:00-05:00'
+featured: true
+image: https://cfde-drc.s3.us-east-2.amazonaws.com/assets/img/b2aifall2026.png
+layout: '@/layouts/Outreach.astro'
+link: https://web.cvent.com/event/3f4cbe6f-4006-4f79-a2ba-2c4fbf77bae3/summary
+short_description: "The Fall 2026 All-Hands Meeting and Open House will highlight significant advances made in the program and highlight some of the breakthroughs by the program teams. Join us to connect with consortium members, discover new resources, and gain hands-on experience with the datasets, tools, and processes driving the future of biomedical AI."
+start_date: '2026-10-20T08:45:00-05:00'
+tags: '["face to face meeting"]'
+title: Bridge2AI 2026 All-Hands Meeting
+dcc:
+- Bridge2AI
+---
+The Fall 2026 All-Hands Meeting and Open House will highlight significant advances made in the program and highlight some of the breakthroughs by the program teams. Join us to connect with consortium members, discover new resources, and gain hands-on experience with the datasets, tools, and processes driving the future of biomedical AI.

src/pages/outreach/CFDE Webinar Series 2026-04-24.md

@@ -0,0 +1,16 @@
+---
+active: true
+carousel: true
+cfde_specific: true
+end_date: '2026-04-24T14:00:00-05:00'
+featured: false
+image: https://cfde-drc.s3.us-east-2.amazonaws.com/assets/img/webinar042426.png
+layout: '@/layouts/Outreach.astro'
+link: https://broadinstitute.zoom.us/webinar/register/WN_x0bGLLt4TbqFGlxlMM-T2A
+short_description: "An introduction to protein knowledge network (ProKN) and use cases integration of ProKN & CFDE in NSF Proto-OKN initiative"
+start_date: '2026-04-24T13:00:00-05:00'
+tags: '["webinar"]'
+title: CFDE Webinar Series
+
+---
+An introduction to protein knowledge network (ProKN) and use cases integration of ProKN & CFDE in NSF Proto-OKN initiative

src/pages/outreach/CFDE Webinar Series 2026-05-29.md

@@ -0,0 +1,18 @@
+---
+active: true
+carousel: true
+cfde_specific: true
+end_date: '2026-05-29T14:00:00-05:00'
+featured: false
+image: https://cfde-drc.s3.us-east-2.amazonaws.com/assets/img/webinar052926.png
+layout: '@/layouts/Outreach.astro'
+link: https://broadinstitute.zoom.us/webinar/register/WN_x0bGLLt4TbqFGlxlMM-T2A
+short_description: "New, Improved, Updated, FAIR-ified, and Integrated Datasets and Tools from Illuminating the Druggable Genome (IDG)"
+start_date: '2026-05-29T13:00:00-05:00'
+tags: '["webinar"]'
+title: CFDE Webinar Series
+dcc:
+- IDG
+
+---
+New, Improved, Updated, FAIR-ified, and Integrated Datasets and Tools from Illuminating the Druggable Genome (IDG)