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Fix PEtab v2 extension config model #3837

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Run time

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Job	Run time
build (windows-latest, 3.x)	4m 26s
build (macos-latest, 3.x)	4m 3s
build (ubuntu-latest, 3.12)	5m 33s
build (windows-latest, 3.12)	5m 16s
build (macos-latest, 3.12)	3m 52s
build (ubuntu-latest, 3.x)	3m 45s
	26m 55s