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Copy pathNOVOpl_config.txt
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31 lines (29 loc) · 886 Bytes
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Copy pathNOVOpl_config.txt
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31 lines (29 loc) · 886 Bytes
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Project:
-----------------------
Project name = Spongia_officinalis
Type = mito
Genome Range = 15000-30000
K-mer = 39
Max memory =
Extended log = 0
Save assembled reads = no
Seed Input = Hippospongia_lachne.fasta
Reference sequence = ~/Hippospongia lachne.fasta
Variance detection = no
Heteroplasmy =
Chloroplast sequence =
Dataset 1:
-----------------------
Read Length = 151
Insert size = 300
Platform = illumina
Single/Paired = PE
Combined reads =
Forward reads = ~/Spongia_officinalis_adapterremove_R1.fq.gz
Reverse reads = ~/Spongia_officinalis_adapterremove_R2.fq.gz
Optional:
-----------------------
Insert size auto = yes
Insert Range = 1.8
Insert Range strict = 1.3
Use Quality Scores = no