NAMESPACE

# Generated by roxygen2: do not edit by hand

S3method("*",fn)
S3method("+",datalist)
S3method("+",fn)
S3method("+",objfn)
S3method("+",objlist)
S3method("[",datalist)
S3method("[",eqnvec)
S3method("[",parframe)
S3method("[",parvec)
S3method("[",prdlist)
S3method("controls<-",fn)
S3method("controls<-",objfn)
S3method("modelname<-",fn)
S3method("modelname<-",objfn)
S3method("names<-",datalist)
S3method(Xf,cppDE)
S3method(Xf,deSolve)
S3method(Xs,cppDE)
S3method(Xs,deSolve)
S3method(addEvent,"NULL")
S3method(addEvent,eventlist)
S3method(as.data.frame,datalist)
S3method(as.data.frame,eqnlist)
S3method(as.data.frame,prdlist)
S3method(as.datalist,data.frame)
S3method(as.datalist,list)
S3method(as.eqnlist,data.frame)
S3method(as.eqnvec,character)
S3method(as.eqnvec,eqnlist)
S3method(as.eventlist,data.frame)
S3method(as.eventlist,list)
S3method(as.parframe,parlist)
S3method(as.parvec,numeric)
S3method(as.parvec,parframe)
S3method(as.prdlist,list)
S3method(c,datalist)
S3method(c,eqnlist)
S3method(c,eqnvec)
S3method(c,parlist)
S3method(c,parvec)
S3method(c,prdlist)
S3method(confint,parframe)
S3method(constraintL1,default)
S3method(constraintL2,default)
S3method(controls,fn)
S3method(controls,objfn)
S3method(covariates,data.frame)
S3method(covariates,datalist)
S3method(format,eqnvec)
S3method(getConditions,fn)
S3method(getConditions,list)
S3method(getDerivs,list)
S3method(getDerivs,objlist)
S3method(getDerivs,parvec)
S3method(getDerivs,prdframe)
S3method(getDerivs,prdlist)
S3method(getDerivs2,list)
S3method(getDerivs2,objlist)
S3method(getDerivs2,parvec)
S3method(getDerivs2,prdframe)
S3method(getDerivs2,prdlist)
S3method(getEquations,fn)
S3method(getEquations,odemodel)
S3method(getParameters,eqnlist)
S3method(getParameters,eqnvec)
S3method(getParameters,eventlist)
S3method(getParameters,fn)
S3method(getParameters,odemodel)
S3method(getParameters,parvec)
S3method(getParameters,prdframe)
S3method(getParameters,prdlist)
S3method(modelname,"NULL")
S3method(modelname,character)
S3method(modelname,fn)
S3method(modelname,objfn)
S3method(plot,datalist)
S3method(plot,parlist)
S3method(plot,prdframe)
S3method(plot,prdlist)
S3method(plotCombined,prdlist)
S3method(plotData,data.frame)
S3method(plotData,datalist)
S3method(plotPars,parframe)
S3method(plotPrediction,prdlist)
S3method(plotProfile,list)
S3method(plotProfile,parframe)
S3method(plotResiduals,default)
S3method(plotValues,parframe)
S3method(predict,prdfn)
S3method(print,dMod2Job)
S3method(print,dMod2Target)
S3method(print,datalist)
S3method(print,eqnlist)
S3method(print,eqnvec)
S3method(print,eventlist)
S3method(print,objfn)
S3method(print,objlist)
S3method(print,obsfn)
S3method(print,odemodel)
S3method(print,parfn)
S3method(print,parlist)
S3method(print,parvec)
S3method(print,petabproblem)
S3method(print,prdfn)
S3method(print,prdframe)
S3method(print,prdlist)
S3method(print,summary.symmetrydetection)
S3method(print,summary.symmetryreduction)
S3method(print,symmetrydetection)
S3method(print,symmetryreduction)
S3method(print,trustfit)
S3method(profile,"function")
S3method(profile,objfn)
S3method(rbind,parframe)
S3method(reduceReplicates,data.frame)
S3method(subset,datalist)
S3method(subset,eqnlist)
S3method(subset,parframe)
S3method(summary,eqnvec)
S3method(summary,objfn)
S3method(summary,obsfn)
S3method(summary,parfn)
S3method(summary,parlist)
S3method(summary,prdfn)
S3method(summary,symmetrydetection)
S3method(summary,symmetryreduction)
S3method(unique,parframe)
S3method(vcov,objlist)
S3method(vcov,trustfit)
S3method(wide2long,data.frame)
S3method(wide2long,list)
S3method(wide2long,matrix)
export("%.*%")
export("%bmm%")
export("controls<-")
export("modelname<-")
export(Id)
export(P)
export(Pexpl)
export(Pimpl)
export(Xd)
export(Xf)
export(Xs)
export(Xt)
export(Y)
export(addEvent)
export(addReaction)
export(as.datalist)
export(as.eqnlist)
export(as.eqnvec)
export(as.eventlist)
export(as.objlist)
export(as.parframe)
export(as.parlist)
export(as.parvec)
export(as.prdlist)
export(assignCompartment)
export(attrs)
export(branch)
export(combine)
export(compile)
export(conservedQuantities)
export(constraintCauchy)
export(constraintChisq)
export(constraintExponential)
export(constraintGamma)
export(constraintL1)
export(constraintL2)
export(constraintRayleigh)
export(controls)
export(coordTransform)
export(covariates)
export(customTotals)
export(dMod2Jobs)
export(dMod_colors)
export(dMod_colors_cb)
export(dMod_divergent)
export(dMod_divergent_cb)
export(dMod_gradient)
export(dMod_gradient_cb)
export(dMod_palette)
export(dMod_palettes)
export(datalist)
export(datapointL2)
export(define)
export(detectFreeCores)
export(distributedComputing)
export(eqnlist)
export(eqnvec)
export(evalConditionResidual)
export(eventlist)
export(exportPEtab)
export(exportPEtabObject)
export(exportSbml)
export(fitErrorModel)
export(format.eqnvec)
export(getConditions)
export(getDerivs)
export(getDerivs2)
export(getEquations)
export(getFluxes)
export(getLocalDLLs)
export(getObservables)
export(getParameters)
export(getReactions)
export(getSymbols)
export(getTotals)
export(ggopen)
export(importPEtab)
export(importSbml)
export(insert)
export(is.datalist)
export(is.eqnlist)
export(is.eqnvec)
export(is.parframe)
export(lbind)
export(load.parlist)
export(loadDLL)
export(localNode)
export(log10Transform)
export(match.fnargs)
export(modelname)
export(msParframe)
export(mstrust)
export(normL2)
export(nullZ)
export(objframe)
export(objlist)
export(obsfn)
export(odemodel)
export(parfn)
export(parframe)
export(parlist)
export(parvec)
export(plotArray)
export(plotCombined)
export(plotData)
export(plotFluxes)
export(plotPairs)
export(plotPars)
export(plotPaths)
export(plotPathsMulti)
export(plotPrediction)
export(plotProfile)
export(plotProfilesAndPaths)
export(plotResiduals)
export(plotTrace)
export(plotValues)
export(prdfn)
export(prdframe)
export(prdlist)
export(profileThreshold)
export(readPEtabTables)
export(readPEtabYaml)
export(reconstControl)
export(reduceReplicates)
export(reml)
export(remlLeverage)
export(repar)
export(replaceSymbols)
export(res)
export(resetWarmStarts)
export(resolveRecurrence)
export(rref)
export(scale_color_dMod)
export(scale_color_dMod_c)
export(scale_color_dMod_div)
export(scale_fill_dMod)
export(scale_fill_dMod_c)
export(scale_fill_dMod_div)
export(setCompartmentVolume)
export(slurmCluster)
export(slurmTemplate)
export(sshNodes)
export(steadyStates)
export(submatrix)
export(subset.eqnlist)
export(symmetryDetection)
export(symmetryReduction)
export(theme_dMod)
export(trust)
export(trustL1)
export(wide2long)
export(write.eqnlist)
import(cppDE)
import(data.table)
import(ggplot2)
import(stringr)
importFrom(Rcpp,sourceCpp)
importFrom(abind,abind)
importFrom(cOde,
  odeC,
  sensitivitiesSymb,
  setForcings
)
importFrom(cppDE,cppFUN)
importFrom(digest,digest)
importFrom(dplyr,
  across,
  filter,
  group_by,
  summarise
)
importFrom(ggplot2,
  aes,
  facet_wrap,
  geom_line,
  geom_point,
  geom_ribbon,
  ggplot,
  scale_y_log10,
  theme,
  ylab
)
importFrom(rlang,
  data_sym,
  parse_expr,
  syms
)
importFrom(stats,
  D,
  approx,
  as.formula,
  density,
  dnorm,
  median,
  optim,
  predict,
  profile,
  qchisq,
  qf,
  rnorm,
  runif,
  sd,
  setNames,
  vcov
)
importFrom(stringr,str_replace_all)
importFrom(tidyselect,all_of)
importFrom(utils,
  capture.output,
  file.edit,
  getParseData,
  glob2rx,
  globalVariables,
  head,
  install.packages,
  installed.packages,
  modifyList,
  read.csv,
  str,
  tail,
  write.csv,
  write.table
)
useDynLib(dMod2, .registration = TRUE)