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chore: remove dead native bindings, stub entries, Rust items and test helpers
Remove 33 native functions that no Python or Rust code calls besides
their registration, the stub entries no Python code names (keeping
every class a kept entry annotates), public Rust constants, methods
and wrappers nothing uses, unused test helpers and a dead test helper
package, nine workflow path filters that match deleted directories,
and the unused `rich` runtime dependency.
Add `make check-native-stub`, part of `make check-ci`: the stub may
declare only functions, classes and constants the extension
registers; protocols, typed dicts, type aliases and private stub-only
classes are typing-only and exempt.
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