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@AstroPathJHU

AstroPath

AstroPath Platform Code
README.md

This project unites [Astro]nomy and [Path]ology concepts, emphasizing spatial biology to advance cancer immunotherapy research. We develop tools aimed at uncovering novel biomarkers and new biological mechanisms.

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  1. AstroPathPipeline AstroPathPipeline Public

    The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

    Python 19 3

  2. mIFTO mIFTO Public

    Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package

    R 6 3

  3. MaSS MaSS Public

    MaSS (Merge a Single Sample); code to merge multipass inForm data

    MATLAB 2

  4. SegTool SegTool Public archive

    Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth

    MATLAB 1

  5. AstroID AstroID Public

    A package for pulling clinical data from an AstroID REDCap build and pushing it into a MSSQL database

    TSQL 2

Repositories

Showing 10 of 10 repositories
  • ConvertIm3 Public

    The executable was written by Richard Wilton to extract the bitmap and metadata information from the akoya im3 image files.ConvertIm3Path is a powershell code, added by Benjamin Green and is a soft wrapper for the executable to run on the sample level and is dependent on the images being in the AstropathPipeline directory format. ConvertIm3Cohor…

    AstroPathJHU/ConvertIm3's past year of commit activity
    PowerShell 0 MIT 1 0 0 Updated Oct 19, 2026
  • MaSS Public

    MaSS (Merge a Single Sample); code to merge multipass inForm data

    AstroPathJHU/MaSS's past year of commit activity
    MATLAB 2 0 0 0 Updated Oct 19, 2026
  • KoMbine Public
    AstroPathJHU/KoMbine's past year of commit activity
    Python 1 Apache-2.0 0 0 0 Updated Oct 1, 2026
  • mIFTO Public

    Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package

    AstroPathJHU/mIFTO's past year of commit activity
    R 6 MIT 3 3 0 Updated Mar 26, 2026
  • SegTool Public archive

    Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth

    AstroPathJHU/SegTool's past year of commit activity
    MATLAB 0 MIT 1 0 0 Updated Mar 25, 2026
  • DONUTS Public
    AstroPathJHU/DONUTS's past year of commit activity
    TSQL 0 0 0 0 Updated Nov 14, 2025
  • AstroID Public

    A package for pulling clinical data from an AstroID REDCap build and pushing it into a MSSQL database

    AstroPathJHU/AstroID's past year of commit activity
    TSQL 2 MIT 0 0 0 Updated Nov 2, 2025
  • AstroPathPipeline Public

    The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

    AstroPathJHU/AstroPathPipeline's past year of commit activity
    Python 19 Apache-2.0 3 0 0 Updated Apr 21, 2025
  • WSIMIR Public

    Perform multi-modality whole slide to whole slide pathology image registration

    AstroPathJHU/WSIMIR's past year of commit activity
    MATLAB 11 MIT 1 0 0 Updated Apr 4, 2025
  • .github Public
    AstroPathJHU/.github's past year of commit activity
    0 0 0 0 Updated Aug 26, 2024

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