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Add Zimager and XShooter - #23

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baileyji wants to merge 167 commits into

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zimager_xshooter

Closed

Add Zimager and XShooter#23
baileyji wants to merge 167 commits into
mainfrom
zimager_xshooter

Commits on May 16, 2026
- Remove offset hack
  oczoske
  committed
  aa4c73b
- Different approach to offset slits
  oczoske
  committed
  43dda59
- Remove stray print that caused test failures
  oczoske
  committed
  a5bd2b2
- Start MicadoIFUSpectralTraceList
  oczoske
  committed
  418acad
Commits on May 18, 2026
- Split apply_to into separate methods for setup and observe
  oczoske
  committed
  31ce32c
- Remove prints
  oczoske
  committed
  3375ec5
- Set ImagePlane to 32bit
  oczoske
  committed
  385cade
- MICADO IFU works
  oczoske
  committed
  b2de962
Commits on May 19, 2026
- Staggered ifu slices
  oczoske
  committed
  b633151
Commits on May 20, 2026
- Flipped sign of offset
  oczoske
  committed
  8b01497
Commits on May 25, 2026
- offset more systematic
  oczoske
  committed
  10a7bdb
Commits on Aug 24, 2026
- Fix transposed axes in make_image_interpolations
  astronomyk
  committed
  2ce224d
Commits on Aug 30, 2026
- Refactor `TERCurve.apply_to()`
  teutoburg
  committed
  fdd4822
Commits on Aug 31, 2026
- Refactor `.apply_to()` in electronic effects
  teutoburg
  committed
  94998b3
- Eliminate remaining `Detector._hdu` calls
  teutoburg
  committed
  779f146
Commits on Sep 4, 2026
Commits on Sep 5, 2026
- Comments and cleanup
  teutoburg
  committed
  0070eaf
Commits on Sep 6, 2026
- Careful when cherry-picking...
  teutoburg
  committed
  ca8b8eb
- Remove `apply_throughput_to_cube`
  teutoburg
  committed
  f370167
- mv `scale_spectrum` to `surface.py`, rm unused functions
  teutoburg
  committed
  070f4b9
- Tiny cleanup in `OpticalTrain.readout()`
  teutoburg
  committed
  146a466
- Cleanup in `TER_curve_utils` etc. (#1014)
  teutoburg
  authored
  7eeb317
- More cleanup
  teutoburg
  committed
  056b1af
- Refactor `.apply_to()` in electronic effects (#1006)
  teutoburg
  authored
  4d9e508
- Bumping version from 0.12.0b2.dev5 to 0.12.0b3.dev0
  astarvienna-bot[bot]
  committed
  bb32c7d
- Add `Detector.det_id` convenience property
  teutoburg
  committed
  81b8362
Commits on Sep 7, 2026
- Hotfix after #1006
  teutoburg
  committed
  c9954a7
- Fixes to FOV and implane-utils for correct flat_lamp scaling
  
  janusbrink
  authored and
  teutoburg
  committed
  7142851
- Stick with binned flux for 2D images
  teutoburg
  committed
  d5fd529
- Fix 2D image rescaling (#1016)
  teutoburg
  authored
  f3fede9
Commits on Sep 9, 2026
- Apply throughput in-place for speed
  oczoske
  committed
  ad3592f
- SPEC scaling now also fixed - moved all scaling to conserve-flux functionality in image_plane_utils and added a parameter to identify differential flux units (as used in cube sources).
  janusbrink
  committed
  549b04d
- Removed stray f-string from debug logging.
  janusbrink
  committed
  4c12007
- Test for cube source
  oczoske
  committed
  14aeaae
- Apply throughput in-place for speed (#1017)
  oczoske
  authored
  a9b1cae
- Add `Detector.__str__()` method
  teutoburg
  committed
  828a284
- Use integer detector ID in tests
  teutoburg
  committed
  38d69ac
Commits on Sep 10, 2026
- Fixed conserve_flux=True parameter in 3D Fov cube case - cancels out, so does not change the results. Debug logging changes.
  janusbrink
  committed
  b729dae
- Add `Detector.det_id` convenience property (#1015)
  teutoburg
  authored
  ae6b5b7
- Fix yet another off-by-one bug (#1013)
  astronomyk
  authored
  b27affe
- SPEC scaling now also fixed (#1018)
  teutoburg
  authored
  406e2ce
- Formatting
  teutoburg
  committed
  fd9d080
- Formatting
  teutoburg
  committed
  d81fe40
- Formatting and cleanup (#1019)
  teutoburg
  authored
  4b87a88
- Allow readout ID, fix Path support
  teutoburg
  committed
  16f2b01
- Resolve random seed in `.observe()`
  teutoburg
  committed
  120e7dc
- Make sure cmds is cleared in between observations
  teutoburg
  committed
  9e79855
- Allow readout ID, fix Path support (#1020)
  teutoburg
  authored
  a482a3f
- Set INHERIT keyword and fix unit to FITS standard
  oczoske
  committed
  30b8d36
Commits on Sep 11, 2026
- Fix indexing in FoV extraction
  oczoske
  committed
  c29df4e
- Added tests to catch the through-slit imaging issue
  
  janusbrink
  authored and
  teutoburg
  committed
  a64d9b0
Commits on Sep 12, 2026
- Skip all tests in test_rst_utils.py
  teutoburg
  authored
  9c7b0dd
- Set mpl backend for tests
  teutoburg
  authored
  719360d
- Set mpl backend for tests (#1026)
  teutoburg
  authored
  c7b5967
- Remove unused `fov_grid()` methods
  
  astronomyk
  authored and
  teutoburg
  committed
  5752b8f
Commits on Sep 13, 2026
- Remove old comments
  teutoburg
  committed
  eecba47
- SimCADO corpse removal
  teutoburg
  committed
  1519e9c
- Some more cleanup and removals
  teutoburg
  committed
  019abf1
Commits on Sep 14, 2026
- Skip all tests in test_rst_utils.py (#1025)
  teutoburg
  authored
  c57604d
- Remove unused `fov_grid()` methods (#1027)
  teutoburg
  authored
  4376155
- Set INHERIT keyword and fix unit to FITS standard (#1022)
  oczoske
  authored
  4cd2139
- Resolve random seed in `.observe()` (#1021)
  teutoburg
  authored
  1a05873
- Ensure positive CDELT and pixel area
  oczoske
  committed
  5d69ce9
- Fix indexing in FoV extraction (#1024)
  oczoske
  authored
  cd7540c
- Improve randomness, refactor electronic effects
  teutoburg
  committed
  cf8915d
Commits on Sep 17, 2026
- Include dark current in AutoExposure
  oczoske
  committed
  5a6f25b
- SimCADO corpse removal (#1029)
  teutoburg
  authored
  590f3fb
- A few more tests
  oczoske
  committed
  bb15056
- test for warning issued
  oczoske
  committed
  3aabed0
- `AutoExposure` to take dark current into account (#1031)
  oczoske
  authored
  ad1832b
- Improve randomness, refactor electronic effects (#1030)
  teutoburg
  authored
  2192785
- Cosmetics
  oczoske
  committed
  1239de5
- Merge branch 'main' into oc/asymm_slit
  oczoske
  authored
  856d8a5
Commits on Sep 18, 2026
- Bump soupsieve from 2.8.4 to 2.9
  dependabot[bot]
  authored
  4af9ce5
- Bump soupsieve from 2.8.4 to 2.9 (#1032)
  teutoburg
  authored
  2664449
- Bumping version from 0.12.0b3.dev0 to 0.12.0b3.dev1
  astarvienna-bot[bot]
  committed
  d828994
- import numpy
  oczoske
  committed
  0c30b87
- Defuse trace outside fov
  oczoske
  committed
  26c780f
- Define slit transforms for image slicer IFUs and offset slits (#922)
  oczoske
  authored
  0202a24
- comments forgotten in #922
  oczoske
  committed
  00b4a93
- Bump anyio from 3.7.1 to 4.14.2
  dependabot[bot]
  authored
  8c8bdc3
- Bump anyio from 3.7.1 to 4.14.2 (#1033)
  teutoburg
  authored
  d309e9b
- Bumping version from 0.12.0b3.dev1 to 0.12.0b3.dev2
  astarvienna-bot[bot]
  committed
  00bc443
Commits on Sep 19, 2026
- Bumping version from 0.12.0b3.dev2 to 0.12.0rc0
  teutoburg
  committed
  19450cf
- Replaced next version placeholders with 0.12.0
  astarvienna-bot[bot]
  committed
  5cafd64
- Bumping version from 0.12.0rc0 to 0.12.0rc1
  teutoburg
  committed
  3ace6b3
Commits on Sep 21, 2026
- Remove no longer needed FOV logging
  teutoburg
  authored
  e0e8357
- Add 'prerelease' option to versioning in workflow
  teutoburg
  authored
  ebd042b
- Bumping version from 0.12.0rc1 to 0.12.0rc2
  astarvienna-bot[bot]
  committed
  b535b13
- Bumping version from 0.12.0rc2 to 0.12.0rc3.dev0
  astarvienna-bot[bot]
  committed
  338356c
Commits on Sep 23, 2026
- Add release notes for v0.12.0 to CHANGELOG
  teutoburg
  authored
  7f5d53e
Commits on Sep 24, 2026
- Update CHANGELOG.md
  oczoske
  authored
  bd9ddcf
- Add release notes for v0.12.0 to CHANGELOG (#1036)
  teutoburg
  authored
  6fd97f2
- Bumping version from 0.12.0rc3.dev0 to 0.12.0
  astarvienna-bot[bot]
  committed
  80c93cb
- Bumping version from 0.12.0 to 0.12.1.dev0
  astarvienna-bot[bot]
  committed
  4ed185b
Commits on Oct 1, 2026
- Bump tqdm from 4.70.0 to 4.70.1 in the main-dependencies group
  dependabot[bot]
  authored
  a8f524f
- Bump sphinxcontrib-mermaid
  dependabot[bot]
  authored
  720022e
- Bump sphinxcontrib-mermaid from 2.1.0 to 2.1.1 in the dev-dependencies group (#1041)
  teutoburg
  authored
  10ac2cf
- Bumping version from 0.12.1.dev0 to 0.12.1.dev1
  astarvienna-bot[bot]
  committed
  99c0633
- Bump urllib3 from 2.7.0 to 2.8.0
  dependabot[bot]
  authored
  a256ed3
- Bump tornado from 6.5.8 to 6.5.9
  dependabot[bot]
  authored
  4cda19b
- Bump notebook from 7.6.1 to 7.6.3
  dependabot[bot]
  authored
  3fe3821
- Bump jupyterlab from 4.6.3 to 4.6.4
  dependabot[bot]
  authored
  dea4b10
- Bump urllib3 from 2.7.0 to 2.8.0 (#1043)
  teutoburg
  authored
  d07b5cb
- Bumping version from 0.12.1.dev1 to 0.12.1.dev2
  astarvienna-bot[bot]
  committed
  4322845
- Bump jupyterlab from 4.6.3 to 4.6.4 (#1046)
  teutoburg
  authored
  747540f
- Bumping version from 0.12.1.dev2 to 0.12.1.dev3
  astarvienna-bot[bot]
  committed
  8200eaa
- Bump tqdm from 4.70.0 to 4.70.1 in the main-dependencies group (#1040)
  teutoburg
  authored
  b495e51
- Bumping version from 0.12.1.dev3 to 0.12.1.dev4
  astarvienna-bot[bot]
  committed
  91d452f
- Bump tornado from 6.5.8 to 6.5.9 (#1044)
  teutoburg
  authored
  a8ce2ca
- Bump notebook from 7.6.1 to 7.6.3 (#1045)
  teutoburg
  authored
  796e37b
- Bumping version from 0.12.1.dev4 to 0.12.1.dev5
  astarvienna-bot[bot]
  committed
  d8f2c09
- Bumping version from 0.12.1.dev5 to 0.12.1.dev6
  astarvienna-bot[bot]
  committed
  2d24516
Commits on Oct 16, 2026
Commits on Oct 17, 2026
Commits on Oct 18, 2026
Commits on Oct 19, 2026
- fix(atmosphere): displace incoming illumination before slit clipping
  baileyji
  committed
  8727eaf
- perf(atmosphere): skip zero shifts on the final illumination grid
  baileyji
  committed
  aef3a53
Commits on Oct 20, 2026
- feat: support configured detector operating points and avalanche noise
  baileyji
  committed
  e2cefad
Commits on Oct 21, 2026
- Preserve exposure metadata when converting MOSAIC detector outputs
  baileyji
  committed
  2780412
Commits on Oct 22, 2026
- Merge ZImager branch throughput while retaining shared spectroscopic numerics
  baileyji
  committed
  71321de
- Keep ADC slit regression fixture explicit about spectroscopic mode
  baileyji
  committed
  b9ba36e

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