Clinical Genomics

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1. scout scout Public

   VCF visualization interface

   HTML 184 50

2. BALSAMIC BALSAMIC Public

   Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer

   Python 59 15

3. raredisease raredisease Public

   Forked from nf-core/raredisease

   CG's rare disease pipeline in next flow, see the main repo here 👇

   Nextflow 6 2

4. microSALT microSALT Public

   Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.

   Python 5 3

5. MUTANT MUTANT Public

   Microbial Utility Toolbox And wrapper for data traNsmission and Transformation

   Python 1

6. oncorefiner oncorefiner Public

   Repo for secondary layer of WGS cancer analyses

   Nextflow 1 2