cortex: autolens_inference row paths moved by autolens_inference#43

dashboard.html

@@ -4,7 +4,7 @@
 <meta charset="utf-8">
 <meta name="viewport" content="width=device-width, initial-scale=1">
 <title>PyAutoCortex Dashboard</title>
-<!-- generated by `pyauto-brain cortex dashboard --apply` on 2026-10-19 — regenerate, do not hand-edit -->
+<!-- generated by `pyauto-brain cortex dashboard --apply` on 2026-10-21 — regenerate, do not hand-edit -->
 <style>:root{color-scheme:light dark;--bg:#fff;--fg:#1f2328;--muted:#59636e;
  --board-max:77.5rem;--board-gutter:1rem;--board-measure:65ch;
  --line:#d8dee4;--btn:#f6f8fa;--ok:#1a7f37;--warn:#9a6700;--bad:#d1242f;
@@ -334,7 +334,7 @@
 - Open autofit_inference: https://github.com/PyAutoLabs/autofit_inference
 - Open euclid_detailed: https://github.com/PyAutoLabs/euclid_detailed
 - Open cowls: https://github.com/PyAutoLabs/cowls
-- Open cowls_ansofi: https://github.com/PyAutoLabs/cowls_ansofi</textarea></details><div class="orchestration-freshness" data-freshness="grey"><details data-freshness-stamp data-refreshed-at="2026-10-19T19:05:59Z"><summary><span data-freshness-label>Last updated 2026-10-19 19:05:59 UTC</span></summary><time datetime="2026-10-19T19:05:59Z">2026-10-19 19:05:59 UTC</time></details><a data-refresh-link href="https://github.com/PyAutoLabs/PyAutoCortex/actions/workflows/dashboard_refresh.yml" title="Open the dashboard refresh controls">↻ Update</a></div></div><p class="orchestration-status" role="status" aria-live="polite"></p></section>
+- Open cowls_ansofi: https://github.com/PyAutoLabs/cowls_ansofi</textarea></details><div class="orchestration-freshness" data-freshness="grey"><details data-freshness-stamp data-refreshed-at="2026-10-21T19:12:01Z"><summary><span data-freshness-label>Last updated 2026-10-21 19:12:01 UTC</span></summary><time datetime="2026-10-21T19:12:01Z">2026-10-21 19:12:01 UTC</time></details><a data-refresh-link href="https://github.com/PyAutoLabs/PyAutoCortex/actions/workflows/dashboard_refresh.yml" title="Open the dashboard refresh controls">↻ Update</a></div></div><p class="orchestration-status" role="status" aria-live="polite"></p></section>
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 <p class="muted mdsrc"><a href="https://github.com/PyAutoLabs/PyAutoCortex/blob/main/dashboard.md" class="board-source-link" title="Markdown version" aria-label="Markdown version"><svg viewBox="0 0 24 24" fill="none" stroke="currentColor" stroke-width="1.6" stroke-linecap="round" stroke-linejoin="round" aria-hidden="true" focusable="false"><path d="M14 3H6a1 1 0 0 0-1 1v16a1 1 0 0 0 1 1h12a1 1 0 0 0 1-1V8Z"/><path d="M14 3v5h5M8 12h8M8 16h6"/></svg></a></p>
@@ -348,7 +348,7 @@
 <tr><td><b>ep_toy_gaussian</b></td><td>0</td><td>0</td><td>2026-10-14</td></tr>
 <tr><td><b>slope_hierarchy_scale</b></td><td>0</td><td>0</td><td>2026-10-14</td></tr>
 <tr><td><b>ic50_workspace</b></td><td>0</td><td>0</td><td>2026-10-14</td></tr>
-<tr><td><b>autolens_inference</b></td><td>0</td><td>0</td><td>2026-10-19</td></tr>
+<tr><td><b>autolens_inference</b></td><td>0</td><td>0</td><td>2026-10-21</td></tr>
 <tr><td><b>autofit_inference</b></td><td>0</td><td>0</td><td>2026-10-16</td></tr>
 <tr><td><b>euclid_detailed</b></td><td>0</td><td>0</td><td>2026-10-15</td></tr>
 <tr><td><b>cowls</b></td><td>0</td><td>0</td><td>2026-10-15</td></tr>
@@ -612,7 +612,7 @@ <h4>Runs (0)</h4>
 </div>
 </details>
 <details class="project" id="project-autolens_inference">
-<summary><h3>autolens_inference</h3><span class="purpose">Do the PyAutoLens inference backends agree on the HST SLaM posterior</span><span class="meta">no runs recorded · updated 2026-10-19</span></summary>
+<summary><h3>autolens_inference</h3><span class="purpose">Do the PyAutoLens inference backends agree on the HST SLaM posterior</span><span class="meta">no runs recorded · updated 2026-10-21</span></summary>
 <div class="project-body">
 <dl class="where">
 <dt>Registered:</dt><dd>not recorded</dd>
@@ -625,13 +625,13 @@ <h4>Current position</h4>
 </div>
 <h4>Runs (0)</h4>
 <p class="muted">nothing on the cluster</p>
-<details class="sub"><summary>Recent log — 5 of 45 entries</summary>
+<details class="sub"><summary>Recent log — 5 of 46 entries</summary>
 <ul class="log">
+<li>2026-10-21 — <i>note</i> — <details class="full"><summary><span class="clip">autolens_inference#43 (likelihood-lifecycle phase 0C, merged 2026-10-21 as 07880c2) moved the rows: results/slam/imaging/hst/&lt;variant&gt;/&lt;config&gt;/stages_seed&lt;n&gt;.* are now results/imaging/&lt;rectangular|delaunay&gt;/hst/validation/&lt;default|light_f…</span><span class="less">show less</span></summary><p>autolens_inference#43 (likelihood-lifecycle phase 0C, merged 2026-10-21 as 07880c2) moved the rows: results/slam/imaging/hst/&lt;variant&gt;/&lt;config&gt;/stages_seed&lt;n&gt;.* are now results/imaging/&lt;rectangular|delaunay&gt;/hst/validation/&lt;default|light_fixed&gt;/&lt;setup_id&gt;/seed_&lt;n&gt;/stages.*; results/searches/point_source/&lt;sampler&gt;/... are results/point_source_source/source_plane/simple/samplers/default/&lt;sampler&gt;/explicit/&lt;setup_id&gt;/seed_&lt;n&gt;/; results/archive/&lt;dated&gt; is archive/YYYY/MM/&lt;dated&gt;/. Old → new map: catalogue/migration_2026_10.json. Entries above this line cite the old paths. #44 (bdc8b2d) exports dashboard/walltime_validation.json (walltime-validation@1, 56 records) to PyAutoPulse.</p></details></li>
 <li>2026-10-19 — <i>note</i> — <details class="full"><summary><span class="clip">412539 (jax_cpu dense) elapsed from sacct, read 2026-10-19 ~17:25Z by the session architect: 412539_0 1-05:59:53 (ended 2026-10-18T23:46:01), 412539_1 1-02:57:03 (ended 2026-10-18T20:43:11). This supplements the 2026-10-19 finished entry,…</span><span class="less">show less</span></summary><p>412539 (jax_cpu dense) elapsed from sacct, read 2026-10-19 ~17:25Z by the session architect: 412539_0 1-05:59:53 (ended 2026-10-18T23:46:01), 412539_1 1-02:57:03 (ended 2026-10-18T20:43:11). This supplements the 2026-10-19 finished entry, which carries no wall. Its rows have still not been read.</p></details></li>
 <li>2026-10-19 — <i>run</i> — <details class="full"><summary><span class="clip">412543 failed — wall 0:47: hst-imaging-mass-samplers wave 1 (cleanslate_2026_10_17_wave1, submit_hst_cleanslate_mass_samplers_jax_gpu_dense): 24-arm slice nautilus/emcee/nuts/smc x sampler seeds 0-2 x both light modes on the base-seed-0 pr…</span><span class="less">show less</span></summary><p>412543 failed — wall 0:47: hst-imaging-mass-samplers wave 1 (cleanslate_2026_10_17_wave1, submit_hst_cleanslate_mass_samplers_jax_gpu_dense): 24-arm slice nautilus/emcee/nuts/smc x sampler seeds 0-2 x both light modes on the base-seed-0 prepared problems of hpc_a100_jax_gpu_dense_fp64, array 0-23%4, 6 h containment, --dependency afterok:412535_0, pin 2026.10.17.1; human-authorised 2026-10-17 — sacct read 2026-10-19 ~17:25Z by the session architect: tasks _0.._17 all FAILED on 2026-10-17 (ends 18:51:38-20:32:26Z, elapsed 00:04:15-00:47:10; wall given is the longest task); _18 CANCELLED after 00:04:00; _[19-23] CANCELLED unstarted 2026-10-17T20:01:03Z. Failure classes as in the 2026-10-17 note (NUTS/SMC A100 OOM; nautilus/emcee row-writer TypeError). Its output and the 8 failed NUTS/SMC rows were moved aside on 2026-10-19 to aside/autolens_inference_cleanslate_wave1_attempt1/ (RAL and laptop)</p></details></li>
 <li>2026-10-19 — <i>note</i> — <details class="full"><summary><span class="clip">HUMAN DECISION 2026-10-19, verbatim: "I want us to check the on going inference campaign on RAL, but I am ready for us to update folder structures on RAL and locally and clean things up so cancel on going jobs and we'll work on the clean u…</span><span class="less">show less</span></summary><p>HUMAN DECISION 2026-10-19, verbatim: "I want us to check the on going inference campaign on RAL, but I am ready for us to update folder structures on RAL and locally and clean things up so cancel on going jobs and we'll work on the clean up". Scheduler read 15:49:05Z: only 412541 and 412565 running; both scancelled ~15:51Z, queue empty; 412539 had COMPLETED. On "yes, go", autolens_inference#36 (flatten, closes #35) merged 15:53:33Z as c3ca4de; the RAL checkout fast-forwarded b91ce9c -&gt; c3ca4de and the laptop to c3ca4de, after a full hpc/sync pull. flatten_cleanslate.py --apply: RAL 28 moves, 55 rewrites; laptop mirror 28 moves, 38 rewrites; both EXIT 0. New layout: output/autolens/imaging/hst/slam/&lt;variant&gt;/&lt;config&gt;/seed_&lt;n&gt;/&lt;stage&gt;/, output/autolens/prepared/&lt;config&gt;/seed_&lt;n&gt;/&lt;variant&gt;/, rows at results/slam/imaging/hst/&lt;variant&gt;/&lt;config&gt;/ (no __cleanslate_2026_10_17 suffix). RAL and laptop each hold 1974 files with identical paths and sizes; hpc/sync status dry run transfers 0. Human, verbatim: "check some older chats, think we dont need prepared, experiments and experiment_sources to exist anymore? Can we archive them somewhere separate to makr things easier to follow. Then do the apply". The wave-1 attempt-1 material (output/experiments 341M, output/experiment_sources 76M, results/searches/experiments with 8 failed NUTS/SMC rows) moved to /mnt/ral/jnightin/inference/aside/autolens_inference_cleanslate_wave1_attempt1/ on RAL and /mnt/c/Users/Jammy/Science/inference/aside/autolens_inference_cleanslate_wave1_attempt1/ on the laptop. prepared/ KEPT as the agent's proposal, not yet confirmed by the human: wave.py needs its manifests, and so does the sparse fixed-light repro. Partial stage dirs of the cancelled legs remain; they are not failures. Execution completion only. No compute submitted.</p></details></li>
 <li>2026-10-19 — <i>run</i> — <details class="full"><summary><span class="clip">412565 failed — wall 44:52: hst-imaging-mass-samplers clean slate: numba_cpu sparse SLaM base (64gb, 8 CPUs), --lens-light both, seeds 0-1, from autolens_inference main b91ce9c (PR #32), pin 2026.10.17.1, output root output/cleanslate_2026…</span><span class="less">show less</span></summary><p>412565 failed — wall 44:52: hst-imaging-mass-samplers clean slate: numba_cpu sparse SLaM base (64gb, 8 CPUs), --lens-light both, seeds 0-1, from autolens_inference main b91ce9c (PR #32), pin 2026.10.17.1, output root output/cleanslate_2026_10_17, results tag cleanslate_2026_10_17, prepared export; --stages-from hpc_a100_jax_cpu_dense_fp64:source_lp shares source_lp[1] from the jax_cpu dense chain with an in-job wait (hpc/wait_for_stage.sh); rows mark that stage shared and exclude its wall from the numba chain wall; submitted 2026-10-17T18:58Z by the architect; human decisions 2026-10-17 (8 CPUs, shared stage, submit now) — CANCELLED by scancel ~15:51Z on the human's decision, not a run failure (sacct CANCELLED, elapsed 1-20:52:11). Complete at cancel (.completed markers): seeds 0 and 1 slam_base light[1], source_pix[1], source_pix[2], mass_total[1] (source_lp[1] shared from jax_cpu dense via --stages-from). Incomplete: slam_base_lightfixed mass_total[1] on both seeds (running). Partial stage dirs left on disk under output/autolens/imaging/hst/slam/&lt;variant&gt;/hpc_a100_numba_cpu_sparse_fp64/seed_&lt;n&gt;/ (flat layout, autolens_inference#36)</p></details></li>
-<li>2026-10-19 — <i>run</i> — <details class="full"><summary><span class="clip">412541 failed — wall 47:04: hst-imaging-mass-samplers clean slate: hpc_a100_jax_cpu_sparse_fp64 (submit_hst_cleanslate_jax_cpu_sparse), --lens-light both, seeds 0-1, pin 2026.10.17.1 (PYAUTO_LIB_BASE=/mnt/ral/jnightin/inference/pins/2026.1…</span><span class="less">show less</span></summary><p>412541 failed — wall 47:04: hst-imaging-mass-samplers clean slate: hpc_a100_jax_cpu_sparse_fp64 (submit_hst_cleanslate_jax_cpu_sparse), --lens-light both, seeds 0-1, pin 2026.10.17.1 (PYAUTO_LIB_BASE=/mnt/ral/jnightin/inference/pins/2026.10.17.1), output root output/cleanslate_2026_10_17, results tag cleanslate_2026_10_17, prepared export output/prepared/cleanslate_2026_10_17/hpc_a100_jax_cpu_sparse_fp64/seed_&lt;n&gt;/&lt;variant&gt;/; human-authorised 2026-10-17 — CANCELLED by scancel ~15:51Z on the human's decision, not a run failure (sacct CANCELLED, elapsed 1-23:04:43). Complete at cancel (.completed markers): seed 0 slam_base light[1], source_lp[1], source_pix[1], source_pix[2], mass_total[1]; seed 1 source_lp[1], source_pix[1]. Incomplete: seed 0 slam_base_lightfixed mass_total[1] (running), seed 1 source_pix[2] (running) onward and its lightfixed leg. Partial stage dirs left on disk under output/autolens/imaging/hst/slam/&lt;variant&gt;/hpc_a100_jax_cpu_sparse_fp64/seed_&lt;n&gt;/ (flat layout, autolens_inference#36)</p></details></li>
 </ul>
 <p class="muted"><a href="https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/autolens_inference.md">full log</a></p>
 <p class="muted">active · both · <a href="https://github.com/PyAutoLabs/autolens_inference/issues/4">autolens_inference#4</a></p>