projects.yaml: Workspace/Science paths; retire subhalo, cowls, cowls_ansofi

projects.yaml

@@ -61,7 +61,7 @@ inference_programme:
 
 subhalo_validation:
   remote: PyAutoLabs/subhalo_validation
-  local_path: /mnt/c/Users/Jammy/Science/active/subhalo_validation
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/active/subhalo_validation
   ral_root: /mnt/ral/jnightin/active/subhalo_validation
   mirror: none
   sync_cli: hpc/sync
@@ -84,12 +84,12 @@ subhalo:
   assistant: autolens_assistant
   witness_file: results/**/*.json
   partition: both
-  status: active
-  note: "registered 2026-10-15 by human decision (PyAutoCortex#67), overriding schema decision 52(a) for this tree: not a git repo, so remote none; ledger is the generic PyAutoLens project-template README; SLACS sample under dataset/, output/ empty, no results/ yet; hpc/sync.conf targets HPC_BASE=/mnt/ral/jnightin/active; batch_cpu submits still say --partition=cpu (no such partition on RAL); ral_root not yet created on RAL; witness undefined until a science task pre-registers one"
+  status: retired
+  note: "retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29"
 
 euclid:
   remote: none
-  local_path: /mnt/c/Users/Jammy/Science/active/euclid
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/complete/euclid
   ral_root: /mnt/ral/jnightin/active/euclid
   mirror: none
   sync_cli: hpc/sync
@@ -117,7 +117,7 @@ euclid_dr1_prelim:
 
 euclid_dr1:
   remote: none
-  local_path: /mnt/c/Users/Jammy/Science/euclid_dr1
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1
   ral_root: /mnt/ral/jnightin/euclid_dr1
   mirror: none
   sync_cli: hpc/sync
@@ -131,7 +131,7 @@ euclid_dr1:
 
 analytic_gaussian:
   remote: none
-  local_path: /mnt/c/Users/Jammy/Science/active/analytic_gaussian
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/development/analytic_gaussian
   ral_root: /mnt/ral/jnightin/active/analytic_gaussian
   mirror: none
   sync_cli: hpc/sync
@@ -145,7 +145,7 @@ analytic_gaussian:
 
 ep_toy_gaussian:
   remote: PyAutoLabs/ep_toy_gaussian
-  local_path: /mnt/c/Users/Jammy/Science/active/ep_toy_gaussian
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/development/ep_toy_gaussian
   ral_root: /mnt/ral/jnightin/active/ep_toy_gaussian
   mirror: none
   sync_cli: hpc/sync
@@ -165,7 +165,7 @@ ep_toy_gaussian:
 # --------------------------------------------------------------------------- #
 profiling:
   remote: none
-  local_path: /mnt/c/Users/Jammy/Science/archive/profiling
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/archive/profiling
   ral_root: /mnt/ral/jnightin/archive/profiling
   mirror: none
   sync_cli: hpc/sync
@@ -193,7 +193,7 @@ cowls_diana:
 
 subhalo_simulations:
   remote: none
-  local_path: /mnt/c/Users/Jammy/Science/archive/subhalo_simulations
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/archive/subhalo_simulations
   ral_root: /mnt/ral/jnightin/archive/subhalo_simulations
   mirror: none
   sync_cli: hpc/sync
@@ -207,7 +207,7 @@ subhalo_simulations:
 
 slope_hierarchy:
   remote: Jammy2211/slope_hierarchy
-  local_path: /mnt/c/Users/Jammy/Science/complete/slope_hierarchy
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/complete/slope_hierarchy
   ral_root: /mnt/ral/jnightin/complete/slope_hierarchy
   mirror: none
   sync_cli: hpc/sync
@@ -221,7 +221,7 @@ slope_hierarchy:
 
 slope_hierarchy_scale:
   remote: PyAutoLabs/slope_hierarchy_scale
-  local_path: /mnt/c/Users/Jammy/Science/active/slope_hierarchy_scale
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/development/slope_hierarchy_scale
   ral_root: /mnt/ral/jnightin/active/slope_hierarchy_scale
   mirror: none
   sync_cli: hpc/sync
@@ -263,7 +263,7 @@ concr:
 
 ic50_workspace:
   remote: Jammy2211/ic50_workspace
-  local_path: /mnt/c/Users/Jammy/Science/active/ic50_workspace
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/development/ic50_workspace
   ral_root: /mnt/ral/jnightin/active/ic50_workspace
   mirror: none
   sync_cli: hpc/sync
@@ -319,7 +319,7 @@ euclid_sersics:
 
 pj011646_final:
   remote: none
-  local_path: /mnt/c/Users/Jammy/Science/complete/PJ011646_final
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/complete/PJ011646_final
   ral_root: /mnt/ral/jnightin/complete/PJ011646_final
   mirror: none
   sync_cli: hpc/sync
@@ -333,7 +333,7 @@ pj011646_final:
 
 euclid_detailed:
   remote: PyAutoLabs/euclid_detailed
-  local_path: /mnt/c/Users/Jammy/Science/active/euclid_detailed
+  local_path: /mnt/c/Users/Jammy/Workspace/Science/active/euclid_detailed
   ral_root: /mnt/ral/jnightin/active/euclid_detailed
   mirror: none
   sync_cli: hpc/sync
@@ -356,8 +356,8 @@ cowls:
   assistant: autolens_assistant
   witness_file: results/**/*.json
   partition: ral
-  status: active
-  note: "born 2026-10-15: euclid_detailed SLaM pipeline (light[1] MGE 4x30 + point, 1250 source pixels, power-law mass) applied to COWLS JWST lenses, starting with M25 COSJ100024+015334 (F444W default, mask_extra_galaxies noise-scaled); source_lp JAX-CPU then numba-CPU; not yet submitted"
+  status: retired
+  note: "retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29"
 
 cowls_ansofi:
   remote: PyAutoLabs/cowls_ansofi
@@ -370,5 +370,5 @@ cowls_ansofi:
   assistant: autolens_assistant
   witness_file: results/**/*.json
   partition: ral
-  status: active
-  note: "born 2026-10-19: spawned from cowls; autolens_inference delaunay_1250 numba_cpu sparse SLaM (MGE 20x2/20x1, Delaunay 1250 AdaptSplit, n_live 200/150/75/150/150) on M25 COSJ100024+015334 F444W only, mask_extra_galaxies noise-scaled, 2.1\" circular mask at (0,0); all stages numba-CPU, one process; not yet submitted"
+  status: retired
+  note: "retired 2026-10-29: defunct; local tree deleted by the human 2026-10-29"

projects/cowls.md

@@ -11,4 +11,5 @@ Born 2026-10-15. Repo PyAutoLabs/cowls (private), M25 COSJ100024+015334 dataset
 
 ## Log
 
+- 2026-10-29 — note — retired: defunct; local tree deleted by the human 2026-10-29
 - 2026-10-15 — note — ledger opened

projects/cowls_ansofi.md

@@ -11,4 +11,5 @@ Born 2026-10-19. Repo PyAutoLabs/cowls_ansofi (private), M25 COSJ100024+015334 F
 
 ## Log
 
+- 2026-10-29 — note — retired: defunct; local tree deleted by the human 2026-10-29
 - 2026-10-19 — note — ledger opened

projects/subhalo.md

@@ -11,4 +11,5 @@ Registered 2026-10-15 (PyAutoCortex#67): SLACS sample under dataset/, output/ em
 
 ## Log
 
+- 2026-10-29 — note — retired: defunct; local tree deleted by the human 2026-10-29
 - 2026-10-15 — note — ledger opened

state.json

@@ -3,8 +3,8 @@
   "organ": "cortex",
   "repo": "PyAutoCortex",
   "status": "yellow",
-  "headline": "YELLOW \u2014 12 active \u00b7 16 running",
-  "updated": "2026-10-23T15:27:28Z",
+  "headline": "YELLOW \u2014 9 active \u00b7 16 running",
+  "updated": "2026-10-29T12:49:17Z",
   "pages_url": "https://pyautolabs.github.io/PyAutoCortex/",
   "items": [
     {
@@ -17,97 +17,97 @@
       "severity": "info",
       "text": "euclid_dr1: 345279 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 345305 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 350804 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 351085 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 351086 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 351087 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 351088 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 351089 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 356227 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 356319 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 384040 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 384046 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 402719 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 402720 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 402721 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     },
     {
       "severity": "info",
       "text": "euclid_dr1: 402722 running (ral)",
       "url": null,
-      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Science/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
+      "prompt": "Use the cortex skill. \u2014 resume euclid_dr1: read PyAutoCortex projects/euclid_dr1.md (Now, Runs, Log) and then /mnt/c/Users/Jammy/Workspace/Science/active/euclid_dr1/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say."
     }
   ]
 }