[Jammy2211]

Summary

Propagates science-project memory to this cell from the reference
(autolens_assistant) via pyauto-brain clone sync (PyAutoLabs/PyAutoBrain#315),
and closes the two birth-time substitution gaps that surfaced while doing it.

A project scaffolded by this cell's start-new-project skill now carries:

• state.md — the templated head pointer a session reads first
  (wiki/project/_state_template.md), rewritten each session and wired into the
  end-of-session journal ritual;
• a session-start block in the generated project AGENTS.md that reads
  state.md, the newest journal entry and profile.md, with
  .claude/hooks/session-start.sh reduced to sourcing the shared block;
• a templated results_summary.md with a covers_through: stamp;
• no results/manifests/ — removed from the scaffold and from every sentence
  that promised it;
• profile.md split at the user/project seam.

Two birth artefacts fixed here, both mechanically:

• the generic files that birth had renamed incompletely ($AUTOLENS_ASSISTANT
  in the generated scaffold, "Lensing background" heading in the profile
  template) were taken from the clone conductor's own substitution output over
  the reference's current copies — not hand-written prose; the files were
  otherwise byte-identical to the substituted reference. Three profile-template
  examples were then hand-adapted the way autogalaxy's were at birth (a rename
  cannot turn "PhD on weak lensing" into a sentence a CTI user recognises).
• .claude/skills/start-new-project.md was a stale real-file copy of the
  pre-#315 skill where every sibling cell has a symlink. Restored as the symlink.

Commits on this branch:

• 523015b feat: science-project memory — state.md as the head pointer a session reads first
• df8408d sync science-project memory from autolens_assistant (#315)

API Changes

None — documentation, skill prose and project-scaffold templates only (plus one
real file restored to the symlink its siblings use). No Python symbol, signature,
default or behaviour changes. The change users see is in the generated project
scaffold.

Test Plan

• check_boundary skips (not the clone reference)
• Gap grep AUTOLENS|lensing|Lensing|autolens|HowToLens over both re-synced files is empty
• .claude/skills/start-new-project.md is a symlink again, matching every sibling cell
• The wiki-currency and clone-boundary workflows are this repo's CI and run on this PR

Known, deliberately not fixed here

Reference example strings no rename rule can reach still stand in this cell and
need the same human domain adaptation autogalaxy got: slacs_subhalo and a
SLaM/slacs0946 run-table row in skills/start-new-project.md,
slacs0737/subhalo filename examples in wiki/project/README.md, and lensing
wording in the AGENTS.md wiki paragraph. Three more .claude/skills/ entries
(_bootstrap_skill.md, _style.md, contribute-upstream.md) are real files
where siblings have symlinks — same birth artefact, left alone.

Part of PyAutoLabs/PyAutoBrain#315.

Generated by the PyAutoLabs agent workflow.