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2 changes: 1 addition & 1 deletion src/spikeinterface/postprocessing/amplitude_scalings.py
Original file line number Diff line number Diff line change
Expand Up @@ -179,7 +179,7 @@ def __init__(
if return_in_uV and recording.has_scaleable_traces():
self._dtype = np.float32
self._gains = recording.get_channel_gains()
self._offsets = recording.get_channel_gains()
self._offsets = recording.get_channel_offsets()
else:
self._dtype = recording.get_dtype()
self._gains = None
Expand Down
2 changes: 1 addition & 1 deletion src/spikeinterface/postprocessing/spike_amplitudes.py
Original file line number Diff line number Diff line change
Expand Up @@ -69,7 +69,7 @@ def __init__(
if return_in_uV and recording.has_scaleable_traces():
self._dtype = np.float32
self._gains = recording.get_channel_gains()
self._offsets = recording.get_channel_gains()
self._offsets = recording.get_channel_offsets()
else:
self._dtype = recording.get_dtype()
self._gains = None
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27 changes: 27 additions & 0 deletions src/spikeinterface/postprocessing/tests/test_spike_amplitudes.py
Original file line number Diff line number Diff line change
@@ -1,8 +1,35 @@
import numpy as np

from spikeinterface.core import NumpyRecording, NumpySorting
from spikeinterface.core.node_pipeline import SpikeRetriever
from spikeinterface.postprocessing import ComputeSpikeAmplitudes
from spikeinterface.postprocessing.tests.common_extension_tests import AnalyzerExtensionCommonTestSuite
from spikeinterface.postprocessing.spike_amplitudes import SpikeAmplitudeNode


class TestComputeSpikeAmplitudes(AnalyzerExtensionCommonTestSuite):

def test_extension(self):
self.run_extension_tests(ComputeSpikeAmplitudes, params=dict())

def test_scaled_amplitude_uses_channel_offset(self):
traces = np.zeros((200, 2), dtype=np.int16)
traces[100, 0] = 10
recording = NumpyRecording([traces], sampling_frequency=1000)
recording.set_property("gain_to_uV", [2.0, 3.0])
recording.set_property("offset_to_uV", [-100.0, -200.0])
sorting = NumpySorting.from_times_and_labels(
[np.array([100], dtype=np.int64)],
[np.array([1], dtype=np.int64)],
sampling_frequency=1000,
unit_ids=[1],
)
sorting.set_property("main_channel_id", [0])
spike_retriever = SpikeRetriever(sorting, recording, channel_from_template=True)
node = SpikeAmplitudeNode(recording, parents=[spike_retriever], peak_shifts={1: 0}, return_in_uV=True)
peaks = np.zeros(1, dtype=[("sample_index", "int64"), ("unit_index", "int64"), ("channel_index", "int64")])
peaks[0] = (100, 0, 0)

amplitudes = node.compute(traces, peaks)

np.testing.assert_array_equal(amplitudes, [-80.0])
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