Issues

• contrafold sample: the sample stream cannot be seeded, and samples 0 and 1 are identical on glibc

  WaymentSteeleLab/EternaFold#15 · Filter by author vbbpinheiro opened on Oct 24, 2026

• contrafold sample: stochastic traceback uses the old multiloop rule, so samples do not follow the posteriors

  WaymentSteeleLab/EternaFold#14 · Filter by author vbbpinheiro opened on Oct 24, 2026

• Consider mentioning biconda installation options

  WaymentSteeleLab/EternaFold#9 · Filter by author matthewfeickert opened on Apr 1, 2026

• MaxDistance parameter

  WaymentSteeleLab/EternaFold#6 · Filter by author ClaireFleur opened on Oct 23, 2024

• BPP2SEQ format, what are "values of the unpairedness potential (derived from probing data)"

  WaymentSteeleLab/EternaFold#5 · Filter by author Psirving opened on Oct 18, 2024
  2

• Improve linearfold/linearpartition patchfiles to not include whitespace differences

  WaymentSteeleLab/EternaFold#3 · Filter by author luxaritas opened on Jan 3, 2024