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@aidenlab

Aiden Lab

The Center for Genome Architecture

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  1. juicer juicer Public

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    Shell 491 191

  2. Juicebox Juicebox Public

    Visualization and analysis software for Hi-C data -

    Java 306 61

  3. 3d-dna 3d-dna Public

    3D de novo assembly (3D DNA) pipeline

    Shell 232 59

  4. straw straw Public

    Extract data quickly from Juicebox via straw

    C++ 70 35

  5. BEAR BEAR Public

    BEAR: viral diagnostic analysis pipeline for SARS-CoV-2

    Shell 6 1

  6. EigenVector EigenVector Public

    Forked from moshe-olshansky/EigenVector

    R functions for very fast eigenvector calculation

    C 11 4

Repositories

Showing 10 of 46 repositories
  • geenee Public
    aidenlab/geenee's past year of commit activity
    TypeScript 0 0 2 1 Updated Oct 22, 2026
  • igvjs-mcp Public
    aidenlab/igvjs-mcp's past year of commit activity
    TypeScript 0 MIT 0 4 0 Updated Oct 22, 2026
  • juicebox-view Public
    aidenlab/juicebox-view's past year of commit activity
    JavaScript 0 0 2 0 Updated Oct 22, 2026
  • juicebox.js Public

    HiC contact matrix visualization

    aidenlab/juicebox.js's past year of commit activity
    JavaScript 24 MIT 16 23 1 Updated Oct 21, 2026
  • juicebox-web Public
    aidenlab/juicebox-web's past year of commit activity
    JavaScript 3 2 4 2 Updated Oct 21, 2026
  • spacewalk Public
    aidenlab/spacewalk's past year of commit activity
    JavaScript 0 MIT 0 1 1 Updated Oct 21, 2026
  • hic-straw Public

    Command line and web utilities for reading .hic contact matrix files

    aidenlab/hic-straw's past year of commit activity
    JavaScript 10 MIT 6 2 3 Updated Oct 21, 2026
  • juicebox-mcp-deprecated Public archive

    Deprecated and archived. The Juicebox MCP server is developed at weiszd/juicebox-mcp: https://github.com/weiszd/juicebox-mcp

    aidenlab/juicebox-mcp-deprecated's past year of commit activity
    JavaScript 0 MIT 2 0 0 Updated Oct 18, 2026
  • Juicebox Public

    Visualization and analysis software for Hi-C data -

    aidenlab/Juicebox's past year of commit activity
    Java 306 MIT 61 265 (2 issues need help) 3 Updated Oct 15, 2026
  • plugins Public

    Claude plugin marketplace from the Aiden Lab: Juicebot (Juicebox Hi-C viewer control) and more

    aidenlab/plugins's past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 14, 2026

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