test: skip e2e tests that read removed GCS test slides

tests/aignostics/application/cli_test.py

@@ -35,6 +35,7 @@
 from aignostics.utils import Health, sanitize_path
 from tests.conftest import assert_parquet_geojson_parity, normalize_output, print_directory_structure
 from tests.constants_test import (
+    GCS_TEST_SLIDES_REMOVED_REASON,
     HETA_APPLICATION_ID,
     HETA_APPLICATION_VERSION,
     HETA_EXPECTED_RESULT_FILES,
@@ -344,6 +345,7 @@ def test_cli_run_submit_fails_when_system_unhealthy_and_no_force(
         _cancel_run_if_submitted(runner, result.stdout)
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.timeout(timeout=60)
 @patch("aignostics.application._cli.SystemService.health_static")
@@ -517,6 +519,7 @@ def test_cli_run_submit_fails_on_missing_url(runner: CliRunner, tmp_path: Path,
         _cancel_run_if_submitted(runner, result.stdout)
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.long_running
 @pytest.mark.flaky(retries=3, delay=5)
@@ -1311,6 +1314,7 @@ def test_cli_run_result_delete_fails_on_no_arg(runner: CliRunner, record_propert
 
 
 # TODO (Helmut): Run this test on a schedule when the GPU ressourcing situation and PAPI pipeline reliabilty improved
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.very_long_running
 @pytest.mark.timeout(timeout=HETA_APPLICATION_DEADLINE_SECONDS + 60 * 30)
@@ -1666,6 +1670,7 @@ def test_cli_run_update_item_metadata_not_dict(runner: CliRunner) -> None:
     assert "Metadata must be a JSON object" in result.output
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.timeout(timeout=180)
 @pytest.mark.sequential
@@ -1756,6 +1761,7 @@ def test_cli_run_dump_and_update_custom_metadata(runner: CliRunner, tmp_path: Pa
         assert isinstance(final_metadata, dict), "Final metadata should be a dictionary"
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.timeout(timeout=240)
 @pytest.mark.sequential
@@ -1892,6 +1898,7 @@ def list_runs_by_tag(tag: str, runner: CliRunner, expected_count: int = 1) -> li
     return runs_data
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.timeout(timeout=180)
 def test_cli_json_format_and_cancel_by_filter_with_dry_run(  # noqa: PLR0915
@@ -3152,6 +3159,7 @@ def test_cli_run_share_token_revoke_error(runner: CliRunner, record_property: ob
 # ─────────────────────────────────────────────────────────────────────────────
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.scheduled
 @pytest.mark.timeout(timeout=120)

tests/aignostics/application/gui_test.py

@@ -23,6 +23,7 @@
 from aignostics.cli import cli
 from tests.conftest import assert_notified, assert_parquet_geojson_parity, normalize_output, print_directory_structure
 from tests.constants_test import (
+    GCS_TEST_SLIDES_REMOVED_REASON,
     HETA_APPLICATION_ID,
     HETA_APPLICATION_VERSION,
     HETA_EXPECTED_RESULT_FILES,
@@ -153,6 +154,7 @@ async def test_gui_cli_submit_to_run_result_delete(
         await user.should_see("Welcome", retries=500)
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.long_running
 @pytest.mark.flaky(retries=1, delay=5)
@@ -321,6 +323,7 @@ async def test_gui_download_dataset_via_application_to_run_cancel_to_find_back(
             user.should_see(marker=f"SIDEBAR_RUN_ITEM:0:{run_id}")
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.long_running
 @pytest.mark.flaky(retries=1, delay=5)

tests/aignostics/dataset/cli_test.py

@@ -11,7 +11,7 @@
 
 from aignostics.cli import cli
 from tests.conftest import normalize_output
-from tests.constants_test import SPOT_1_FILENAME, SPOT_1_FILESIZE, SPOT_1_GS_URL
+from tests.constants_test import GCS_TEST_SLIDES_REMOVED_REASON, SPOT_1_FILENAME, SPOT_1_FILESIZE, SPOT_1_GS_URL
 
 SERIES_UID = "1.3.6.1.4.1.5962.99.1.1069745200.1645485340.1637452317744.2.0"
 THUMBNAIL_UID = "1.3.6.1.4.1.5962.99.1.1038911754.1238045814.1637421484298.15.0"
@@ -126,6 +126,7 @@ def test_cli_idc_download_instance_thumbnail(runner: CliRunner, caplog, record_p
         )
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.flaky(retries=1, delay=5)
 @pytest.mark.timeout(timeout=60 * 2)

tests/aignostics/platform/e2e_test.py

@@ -28,6 +28,7 @@
 from aignostics import platform
 from aignostics.platform import Run, RunSdkMetadata
 from tests.constants_test import (
+    GCS_TEST_SLIDES_REMOVED_REASON,
     HETA_APPLICATION_ID,
     HETA_APPLICATION_VERSION,
     PIPELINE_CPU_PROVISIONING_MODE,
@@ -435,6 +436,7 @@ def _find_and_validate(
             _validate_output(run, Path(temp_dir), checksum_attribute_key)
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.very_long_running
 @pytest.mark.scheduled_only
@@ -534,6 +536,7 @@ def test_platform_test_app_find_and_validate() -> None:
     )
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.scheduled_only
 @pytest.mark.timeout(timeout=HETA_APPLICATION_SUBMIT_AND_FIND_SUBMIT_TIMEOUT_SECONDS)
@@ -576,6 +579,7 @@ def test_platform_heta_app_find_and_validate() -> None:
     )
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.stress_only
 @pytest.mark.long_running

tests/aignostics/qupath/gui_test.py

@@ -20,6 +20,7 @@
 from aignostics.utils import __project_name__
 from tests.conftest import assert_notified, normalize_output, print_directory_structure
 from tests.constants_test import (
+    GCS_TEST_SLIDES_REMOVED_REASON,
     HETA_APPLICATION_ID,
     HETA_APPLICATION_VERSION,
     HETA_EXPECTED_RESULT_FILES,
@@ -134,6 +135,7 @@ async def test_gui_qupath_install_and_launch(  # noqa: PLR0913, PLR0917
         pytest.fail(f"Failed to kill QuPath process: {e}")
 
 
+@pytest.mark.skip(reason=GCS_TEST_SLIDES_REMOVED_REASON)
 @pytest.mark.e2e
 @pytest.mark.long_running
 @pytest.mark.skipif(

tests/constants_test.py

@@ -8,6 +8,11 @@
 
 TEST_SUITE = "AIGNOSTICS"
 
+# The SPOT_*_GS_URL slides were removed from storage. Tests that read them are skipped.
+GCS_TEST_SLIDES_REMOVED_REASON = (
+    "Test slides in gs://aignostics-platform-ext-a4f7e9/python-sdk-tests/ were removed from storage."
+)
+
 SPOT_0_GS_URL = (
     "gs://aignostics-platform-ext-a4f7e9/python-sdk-tests/he-tme/slides/8fafc17d-a5cc-4e9d-a982-030b1486ca88.tiff"
 )