Issues

• osx-arm64 CircleCI builds fail since conda-forge-ci-setup 4.29.0: 10.9 SDK selected, Info.plist Permission denied

  bioconda/bioconda-recipes#70401 · Filter by author jibeomko opened on Oct 18, 2026

• alevin-fry 0.18.3: package published, but no quay.io/biocontainers image (newest is 0.18.2)

  bioconda/bioconda-recipes#70400 · Filter by author scttfrdmn opened on Oct 17, 2026

• r-presto: no build for R 4.5 (any platform) -- Seurat 5's FindAllMarkers falls back to its slow single-threaded path

  bioconda/bioconda-recipes#70398 · Filter by author scttfrdmn opened on Oct 17, 2026

• souporcell: add linux-aarch64 build

  bioconda/bioconda-recipes#70342 · Filter by author govinda-kamath opened on Oct 15, 2026

• homer 5.1: compiled tools carry an RPATH into the build env, so they fail to load libstdc++ (and HOMER exits 0 with empty results)

  bioconda/bioconda-recipes#70249 · Filter by author scttfrdmn opened on Oct 13, 2026

• macs2 2.2.9.1 linux-64 builds _2 through _5 reference __log_finite/__exp_finite and fail to import on glibc >= 2.31 (incl. the biocontainers image)

  bioconda/bioconda-recipes#70217 · Filter by author scttfrdmn opened on Oct 13, 2026

• humann 3.9 (noarch) ships its own x86-64 diamond 2.0.15 and bowtie2 2.2.3 in bin/, overwriting its declared run deps

  bioconda/bioconda-recipes#70213 · Filter by author scttfrdmn opened on Oct 13, 2026

• [update] ensembl-vep 116.2 -> 116.3

  bioconda/bioconda-recipes#70187 · Filter by author FdeCad opened on Oct 12, 2026

• [update] mrbayes 3.2.8 -> 3.2.9

  bioconda/bioconda-recipes#70186 · Filter by author FdeCad opened on Oct 12, 2026

• [update] bioconductor-methylkit 1.36.0 -> 1.38.0

  bioconda/bioconda-recipes#70185 · Filter by author FdeCad opened on Oct 12, 2026

• [update] bioconductor-geneselectmmd 2.54.0 -> 2.56.0

  bioconda/bioconda-recipes#70184 · Filter by author FdeCad opened on Oct 12, 2026

• [update] gatk4 4.6.2.0 -> 4.7.0.0

  bioconda/bioconda-recipes#70183 · Filter by author FdeCad opened on Oct 12, 2026
  1

• [update] bioconductor-biovizbase 1.58.0 -> 1.60.0

  bioconda/bioconda-recipes#70182 · Filter by author FdeCad opened on Oct 12, 2026

• ucsc-blat 482 (osx-arm64): blat has an invalid code signature and is killed at launch (exit 137)

  bioconda/bioconda-recipes#70167 · Filter by author hyphaltip opened on Oct 11, 2026

• r-saige 1.3.1: SAIGE.so needs the removed tbb::task API, so library(SAIGE) fails on linux-64 and linux-aarch64

  bioconda/bioconda-recipes#70035 · Filter by author scttfrdmn opened on Oct 8, 2026

• Six packages ship x86-64 binaries under linux-aarch64 or noarch; nothing lints ELF arch against subdir

  bioconda/bioconda-recipes#69811 · Filter by author scttfrdmn opened on Oct 2, 2026
  3

• [broken package] Seqfu has non working versions

  bioconda/bioconda-recipes#69758 · Filter by author telatin opened on Sep 30, 2026

• package bioconductor-depmap cannot be installed in prefix with spaces

  bioconda/bioconda-recipes#69522 · Filter by author gernophil opened on Sep 22, 2026

• Generating PDF report with MAGeCK does not work anymore

  bioconda/bioconda-recipes#69499 · Filter by author gernophil opened on Sep 22, 2026

• repaq xz dependency

  bioconda/bioconda-recipes#69342 · Filter by author marrip opened on Sep 17, 2026

• gnuplot-py 1.8 py3 build ships partially converted code (2to3 aborts silently)

  bioconda/bioconda-recipes#68921 · Filter by author dSizovs opened on Sep 8, 2026

• pycoqc: h5py=2.9.0 pin is the only thing blocking linux-aarch64

  bioconda/bioconda-recipes#68793 · Filter by author scttfrdmn opened on Sep 3, 2026
  2

• gtdbtk and comebin pin pplacer =1.1.alpha19, the one version without linux-aarch64

  bioconda/bioconda-recipes#68792 · Filter by author scttfrdmn opened on Sep 3, 2026
  1

• gatk4: multi-output split dropped noarch, so gatk4-main/gatk4-spark have no arm64 build

  bioconda/bioconda-recipes#68791 · Filter by author scttfrdmn opened on Sep 3, 2026

• metamdbg: additional-platforms block removed in 1.3, dropping linux-aarch64 and osx-arm64

  bioconda/bioconda-recipes#68790 · Filter by author scttfrdmn opened on Sep 3, 2026