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Installation

conda create -n cromwell python=3.7 pip
conda activate cromwell

pip install cromwell-tools

This might be required:

pip install python-dateutil
pip install google-api-python-client

aws s3 cp s3://dp-lab-home/software/install-sharp-0.0.4.sh - | bash

Run

./submit.sh \
    -k ~/secrets-aws.json \
    -i config/PBMC_v2_Meth_Hash_2_ADT.inputs.json \
    -l config/PBMC_v2_Meth_Hash_2_ADT.labels.json \
    -o Sharp.options.aws.json