Issues

• About IL15 interaction

  jinworks/CellChat#468 · Filter by author leethargic opened on Aug 28, 2026

• Zero value in the computeRegionDistance

  jinworks/CellChat#466 · Filter by author JinAshley opened on Aug 10, 2026

• Please check your cell.type.decomposition's colnames, and make sure they are the same as the cell groups' names in the SpatialCellChat.

  jinworks/CellChat#465 · Filter by author lichen2018 opened on Aug 5, 2026

• will there be a python version with gpu version

  jinworks/CellChat#463 · Filter by author asmlgkj opened on Jun 5, 2026

• Bug in netVisual_heatmap may compute incorrect differences when row/column orders differ between compared networks

  jinworks/CellChat#462 · Filter by author SDelb opened on May 11, 2026
  1

• Issue with spatiaGiplot

  jinworks/CellChat#461 · Filter by author dianegg25-tech opened on May 11, 2026

• Species gene-name convention discrepancy

  jinworks/CellChat#460 · Filter by author VittoriaOssanna opened on May 11, 2026

• Question about batch effects in netVisual_diffInteraction and merging multiple groups for heatmap visualization

  jinworks/CellChat#459 · Filter by author lh12565 opened on May 6, 2026

• multiple spatial samples

  jinworks/CellChat#458 · Filter by author Sophielsn opened on Apr 22, 2026

• liftCellChat() corrupts centrality mapping (netP$centr): sender identities swap in signalingRole_scatter

  jinworks/CellChat#457 · Filter by author mhvbyrne opened on Apr 10, 2026
  1

• Issue with netVisual_diffInteraction( )

  jinworks/CellChat#456 · Filter by author Achiraa opened on Mar 27, 2026
  1

• SpatialCellChat::computeCommunProb on CosMx data

  jinworks/CellChat#455 · Filter by author ynpan910 opened on Mar 26, 2026
  1

• Co-Receptor Expression

  jinworks/CellChat#454 · Filter by author mckoch234 opened on Mar 25, 2026

• Merging Xenium objects with 2 conditions and 3 replicates Analysis

  jinworks/CellChat#452 · Filter by author mckoch234 opened on Mar 24, 2026
  3

• filterProbability() fails or hangs with large SpatialCellChat

  jinworks/CellChat#451 · Filter by author Chiaraderk opened on Mar 20, 2026
  1

• netVisual_circle error if aggregateNet used with sources.use or targets.use

  jinworks/CellChat#450 · Filter by author matthewbradley22 opened on Mar 18, 2026
  1

• Merged CellChat Object netVisual_diffInteraction error

  jinworks/CellChat#449 · Filter by author jmo3pay opened on Mar 13, 2026

• Best practices for filtering and visualizing differential interactions in CellChat

  jinworks/CellChat#448 · Filter by author OryLies opened on Mar 4, 2026
  1

• Error in SpatialCellChat computeCommunProb

  jinworks/CellChat#447 · Filter by author daniannr opened on Mar 3, 2026

• CellChat installation error

  jinworks/CellChat#446 · Filter by author PanSX-Dr opened on Feb 28, 2026
  1

• Deprecated parameter used in spatialCCCDistPlot

  jinworks/CellChat#445 · Filter by author daniannr opened on Feb 27, 2026

• scale.factors or spatial.factors?

  jinworks/CellChat#444 · Filter by author ozcelikelif opened on Feb 25, 2026
  3

• Plotting issues in netVisual_circle / netVisual_individual and hierarchy layout (self-loop orientation & tiny nodes)

  jinworks/CellChat#443 · Filter by author songflowerr opened on Feb 14, 2026
  1

• Access CellChat version 2.1.1

  jinworks/CellChat#442 · Filter by author thatchayut opened on Feb 9, 2026
  1

• netVisual_heatmap() changing bar plot sizes

  jinworks/CellChat#441 · Filter by author Styli898 opened on Feb 9, 2026
  2