Issues

• Is this pipeline actively maintained?

  saeyslab/SCIP#53 · Filter by author tatyana-perlova opened on Jan 19, 2024
  1

• Use pre-commit package for enforcement

  saeyslab/SCIP#50 · Filter by author MaximLippeveld opened on Jul 5, 2022

• Specify different memory requirements for GPU workers in mpi mode

  enhancement
  saeyslab/SCIP#48 · Filter by author MaximLippeveld opened on Mar 3, 2022

• Implement possibility to refine masks after CellPose segmentation

  segmentation
  saeyslab/SCIP#47 · Filter by author MaximLippeveld opened on Feb 3, 2022
  1

• Switch to tifffile in multiframe tiff loader

  data-loading
  saeyslab/SCIP#44 · Filter by author MaximLippeveld opened on Nov 1, 2021 · BII 2021

• Add fluorescence intensity quality control plots to spot batch effects

  preprocessing
  saeyslab/SCIP#35 · Filter by author MaximLippeveld opened on Aug 26, 2021

• Compute CP MeasureImageQuality features to filter out abberant images prior to full computation

  preprocessing
  saeyslab/SCIP#34 · Filter by author MaximLippeveld opened on Aug 25, 2021

• Compute quantiles with random undersampling

  preprocessing
  saeyslab/SCIP#27 · Filter by author MaximLippeveld opened on Aug 24, 2021 · BII 2021

• Add per-image min-max normalization

  preprocessing
  saeyslab/SCIP#26 · Filter by author MaximLippeveld opened on Aug 24, 2021 · BII 2021

• Implement principal feature analysis

  enhancementimage-features
  saeyslab/SCIP#13 · Filter by author MaximLippeveld opened on Jul 15, 2021

• Implement feature extraction that combines channels

  enhancementimage-features
  saeyslab/SCIP#12 · Filter by author MaximLippeveld opened on Jul 15, 2021 · BII 2021

• Feature extraction from pretrained neural nets

  enhancementimage-features
  saeyslab/SCIP#8 · Filter by author MaximLippeveld opened on Jul 15, 2021

• Add demo dataset for new users

  enhancement
  saeyslab/SCIP#1 · Filter by author MaximLippeveld opened on Jul 14, 2021