Issues

• GBSG/SUPPORT data tasks and curve evaluation for the merged SurvivalMDN

  sunlabuiuc/PyHealth#1357 · Filter by author arittrosaha opened on Oct 30, 2026
  1

• kg_emb models: default L3 penalty has no coefficient, negative scores are summed, and ns other than "adv" breaks TransE and RotatE

  sunlabuiuc/PyHealth#1346 · Filter by author AxelNoun opened on Oct 28, 2026

• Add Survival Mixture Density Networks for survival prediction

  sunlabuiuc/PyHealth#1297 · Filter by author amartinez1224 opened on Oct 15, 2026

• Interrupted first build leaves a partial event table which later runs use without a warning

  sunlabuiuc/PyHealth#1295 · Filter by author konstde00 opened on Oct 14, 2026
  1

• OMOP: add observation_period and visit_detail to the default config

  sunlabuiuc/PyHealth#1294 · Filter by author kojikojikojikoji opened on Oct 14, 2026
  1

• Internal transfers are counted as readmissions

  sunlabuiuc/PyHealth#1269 · Filter by author JosephSBoyle opened on Oct 5, 2026
  3

• PyHealth 2.0: several modules still target the 1.x dataset API

  sunlabuiuc/PyHealth#1201 · Filter by author AxelNoun opened on Aug 25, 2026
  5

• Refactor: split CheferInterpretable into AttentionInterpretable and GradientInterpretable

  enhancementrefactor
  sunlabuiuc/PyHealth#1166 · Filter by author jhnwu3 opened on Jun 21, 2026

• fix: add missing stacklevel=2 to warnings.warn() calls

  sunlabuiuc/PyHealth#1164 · Filter by author rtmalikian opened on Jun 20, 2026

• FHIR Bug Issues Thread

  Bug

  sunlabuiuc/PyHealth#1157 · Filter by author jhnwu3 opened on Jun 7, 2026
  1

• Generative modeling module bug forum thread

  Bug

  sunlabuiuc/PyHealth#1156 · Filter by author jhnwu3 opened on Jun 7, 2026
  1

• Reproducibility gap in ICU pathogen prediction benchmarks (MIMIC-IV)

  sunlabuiuc/PyHealth#1153 · Filter by author netanelcyber opened on May 29, 2026
  1

• [Feature] Implement KeyClass (Weak Supervision) for Clinical Notes

  sunlabuiuc/PyHealth#1107 · Filter by author ShuqingZou opened on Apr 22, 2026

• fix: kg_emb broken import in PyHealth 2.0

  sunlabuiuc/PyHealth#952 · Filter by author capccode opened on Apr 7, 2026
  3

• Task hash should probably also include the init args of a TaskClass()

  documentation
  sunlabuiuc/PyHealth#916 · Filter by author jhnwu3 opened on Mar 27, 2026
  2

• Interpretability Target_Idx / Multilabel setting is not well-defined

  documentation
  sunlabuiuc/PyHealth#915 · Filter by author jhnwu3 opened on Mar 27, 2026
  1

• PyHealth trainer uses deprecated model.mode attribute instead of checking its output or label processors

  sunlabuiuc/PyHealth#914 · Filter by author jhnwu3 opened on Mar 27, 2026
  1

• Create file structure standard/documentation for how people should port over their task data splits.

  documentation
  sunlabuiuc/PyHealth#913 · Filter by author jhnwu3 opened on Mar 27, 2026

• Add SepsisPredictionEICU and SepsisPredictionMIMIC4 tasks — pre-ICU window, Sepsis-3 proxy labeling

  sunlabuiuc/PyHealth#911 · Filter by author SHA888 opened on Mar 25, 2026
  3

• Add documentation to each dataset on download sources, and what files specifically are compatible.

  sunlabuiuc/PyHealth#883 · Filter by author jhnwu3 opened on Mar 6, 2026
  3

• PyHealth processors -> embeddings not clear which are compatible

  sunlabuiuc/PyHealth#865 · Filter by author jhnwu3 opened on Feb 20, 2026

• trainer.evaluate of metrics is inconsistent due to batch-wise aggregation

  bug
  sunlabuiuc/PyHealth#859 · Filter by author jhnwu3 opened on Feb 17, 2026
  4

• A few interpreters (e.g. SHAP & LIME, maybe more) incorrectly always assume input is sequence or time series

  sunlabuiuc/PyHealth#858 · Filter by author Logiquo opened on Feb 17, 2026
  3

• masking has been proven to be problematic even for now. especially some methods will zero values for perturbation, which cause the x.sum(dim=...) == 0 method fail significantly.

  sunlabuiuc/PyHealth#820 · Filter by author jhnwu3 opened on Feb 5, 2026

• Interpretability bugs and improvements required

  sunlabuiuc/PyHealth#817 · Filter by author jhnwu3 opened on Feb 5, 2026