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biocompute-objects

Here are 8 public repositories matching this topic...

nextflow-io / nf-prov

Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-Crate.

bioinformatics nextflow pipelines crates provenance workflows research-object biocompute-objects bco biocompute ro-crate provenance-tracking research-object-crates

Updated Oct 13, 2026
Groovy

sbg / bco-app

BCO App by Seven Bridges

sevenbridges common-workflow-language shiny-apps biocompute-objects biocompute

Updated Jul 27, 2023
R

sbg / biocompute

Create and Manipulate BioCompute Objects

workflow bioinformatics sevenbridges standardization biocompute-objects science-communication biocompute

Updated Jun 6, 2024
R

biocompute-objects / bco_editor

A web application that can be used to create and edit BioCompute objects based on BioCompute schema described in the BCO specification document.

web-application biocompute-objects bco biocompute

Updated Apr 22, 2022
JavaScript

mr-c / hive-cwl-examples

commonwl biocompute-objects

Updated Jul 2, 2020

seankim658 / bco-llm-poc

BioCompute Object Assistant

bioinformatics biocompute-objects rag llm

Updated Apr 16, 2024
Python

clinical-biomarkers / biomarker-sdtm

Agent skill that turns biomarker assay specs and patient lab data into BioCompute Objects and BiomarkerKB records, and converts them to and from CDISC SDTM.

cdisc clinical-data biocompute-objects fair-data agent-skills claude-skills biomarkerkb

Updated Oct 19, 2026
Python

skoc / BCO-Execution

Repository to share data, workflows, apps, and scripts working toward the goal of execution of BioCompute Objects (BCO).

python bioinformatics bioinformatics-pipeline r-shiny sevenbridges reproducibility cwl biocompute-objects cwltool biocompute

Updated Jun 10, 2021
Common Workflow Language

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