HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
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Jul 17, 2025 - Python
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chromosome-conformation-capture
Here are 7 public repositories matching this topic...
An easy-to-use Hi-C data processing software supporting distributed computation.
python bioinformatics pipeline pairs hi-c cooler arima chromosome-conformation-capture 4d-nucleome-network
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Jul 3, 2026 - Python
Visual exploration of large genome interaction matrices with interactive small multiples.
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Dec 1, 2021 - JavaScript
ARCH3D: A foundation model for global genome architecture
bioinformatics biology artificial-intelligence hi-c chromosome-conformation-capture genome-architecture scientific-machine-learning digital-biology foundation-model arch3d
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Sep 3, 2026 - Python
Multi Resolution Analysis of Tiling Arrays. (R package)
bioinformatics r genomics microarray segmentation chromatin normalization chromosome-conformation-capture 4c tiling-arrays multi-resolution chip-on-chip
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Mar 9, 2023 - R
Chromosome Conformation Capture on Chip (4C): Data Processing. (Workflow/Scripts)
bioinformatics genomics microarray segmentation normalization chromosome-conformation-capture 4c tiling-arrays multi-resolution
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Sep 30, 2017 - R
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