diffbind

Here are 4 public repositories matching this topic...

challagandla / oracle-chip-seq

ChIP-seq analysis: QC and contamination screening, Bowtie2 alignment, MACS2 broad peaks, DiffBind, and monaLisa/JASPAR motif enrichment, with a MultiQC report.

bioinformatics snakemake genomics computational-biology multiqc chip-seq histone-modifications epigenomics peak-calling deeptools diffbind oracle-platform motif-enrichment

Updated Jul 15, 2026
Python

SoumenEpigene / GSE107221-H3K4me3-KDM5A-ChIPseq

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Reproducible ChIP-seq analysis pipeline for GSE107221 using Galaxy, ChIPseeker and DiffBind to identify KDM5A-regulated H3K4me3 loci.

r epigenetics bioconductor chip-seq galaxy macs2 diffbind chipseeker cut-and-tag h3k4me3 kdm5a

Updated Aug 5, 2026
R

AnkitaBhosale031 / comparative-atac-seq-analysis

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Comparative ATAC-seq analysis of Alzheimer's Disease and Medulloblastoma microglia using BWA, SAMtools, MACS2, DiffBind, BEDTools, and HOMER to identify shared chromatin accessibility patterns.

python bioinformatics r genomics jupyter-notebook atac-seq homer chromatin epigenomics macs2 microglia diffbind

Updated Jul 22, 2026
Jupyter Notebook

Zaki-1052 / cleave

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Self-hosted CUT&RUN bioinformatics platform for the Ferguson Lab at UCSD. Replicates CUTANA Cloud and extends it with trimming, SEACR/MACS2, DiffBind, custom heatmaps, Pearson correlation, & Roman normalization. React + FastAPI + PostgreSQL on EC2.

react bioinformatics pipeline genomics postgresql igv chromatin epigenomics peak-calling fastapi diffbind cut-and-run

Updated Aug 26, 2026
Python

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