dna-sequence

Bioinformatics library in Kotlin

Variational Auto Encoders for learning binding signatures of transcription factors

In this project we implement a DNA-Genetic Encryption Technique (D-GET) in order to make the DNA SEQUENCE more secure and less predictable.

A lightweight Python module to read and write FASTA sequence records

A DNA design and assembly method based on multi-objective optimization.

Algorithm Semester-long Project

Scripts to analyse the sequence composition and bias of protein and nucleotide sequences.

Recode a DNA sequence to match a target amino‑acid sequence with the minimal number of nucleotide changes, preserving the reading frame. Includes a CLI and Python API.

Analyze a DNA sequence for primer construction

DNAc is a programming language for DNAs.

Streamlit dashboard for interactive DNA sequence analysis: GC content, nucleotide composition, and transcription/translation, with Plotly visualisations.

Moduating gene expression via in-silico mutagenesis

Offline bilingual DNA sequence inspector for Windows

🧬 Zero-dependency Python CLI to translate RNA and DNA sequences into amino acid chains using the standard genetic code, with FASTA-ready output formats.

⚗️ Zero-dependency Python CLI to generate DNA complements and reverse complements using standard base-pairing rules.

Fine-tuning DNABERT-2 to classify normal vs tumour colorectal gene enhancers from DNA sequence alone (MSc thesis). PR-AUC 0.758 · arXiv:2509.25274

A comprehensive implementation of DNA sequence alignment algorithms using dynamic programming.

Beginner Python FASTA toolkit for DNA validation, GC content, reverse complements, and motif analysis.

Bioinformatics ML project comparing DNA sequence encoding methods for classification.

A repository containing all the file projects that I have for the Bioinformatics 3 (COMP 4312b) course.