OpenGene / gencore Star 126 Code Issues Pull requests Generate duplex/single consensus reads to reduce sequencing noises and remove duplications bioinformatics duplex ngs sequencing consensus duplication deduplication somatic deep-sequencing sequencing-error sequencing-noise duplex-sequencing Updated Oct 27, 2023 C++
fulcrumgenomics / fgumi Sponsor Star 53 Code Issues Pull requests High-performance UMI tools for NGS data analysis rust bioinformatics genomics ngs sequencing umi duplex-sequencing consensus-calling Updated Sep 3, 2026 Rust
bbglab / deepUMIcaller Star 6 Code Issues Pull requests A Nextflow pipeline for duplex sequencing data analysis nextflow variant-calling duplex-sequencing Updated Sep 2, 2026 Nextflow
bbglab / deepCSA Star 2 Code Issues Pull requests Pipeline for the analysis of the clonal structure of tissues using duplex-sequencing data. nextflow positive-selection duplex-sequencing driver-mutation Updated Sep 3, 2026 Python
Green-Lab-MDACC / CAPP_SEQ_pipeline Star 0 Code Issues Pull requests ctdna duplex-sequencing single-stranded-dna-sequencing Updated Jan 26, 2023 Shell
ndbrown6 / innovation-lab Star 0 Code Issues Pull requests MSKCC CMO Innovation Lab python r pipeline makefile perl conda high-performance-computing umi high-throughput-sequencing copy-number-variation targeted-sequencing duplex-sequencing Updated May 19, 2023 Makefile
bbglab / DeepClone_protocol Star 0 Code Issues Pull requests End-to-end duplex sequencing protocol to study somatic mutagenesis and selection somatic-mutations positive-selection dna-sequencing mutational-signatures duplex-sequencing driver-mutation normal-tissue Updated Aug 18, 2026 HTML
clintval / mutpos2vcf Star 0 Code Issues Pull requests Script to convert Duplex Sequencing .mutpos file formats into valid VCF files ngs mutation vcf variant-calling duplex-sequencing Updated Sep 20, 2018 Python