protists

A collection of datasets and neural networks for microorganism image classification

De nove assembly and annotation of Fragilaria radians transcriptome

Code and plots for the paper of Jauss & Walden et al., 2020, https://www.frontiersin.org/articles/10.3389/fmicb.2020.592189/

Which genomes are where in the big DBs?

Code and plots for the paper of Walden et al., 2021, https://doi.org/10.1093/femsec/fiab081

An e-book about the evolution and diversity of microbial eukaryotes including fungi.

Measures testate amoeba tests (shells) from microscope pictures or drawings: finds the scale bar, outline and aperture, then gives length, width, aperture width, neck and ratios, a radial profile and a 250-point outline for geometric morphometrics. Desktop app (Windows, macOS) and command line; every hand correction is recorded.

Team Goop's 'Iron out the Kinks' Repo

Protists Survival is an educational arcade-style game where you play as a protist from different eukaryotic supergroups. Your goal is to survive as long as possible by collecting energy and avoiding dangers in a dynamic, scrolling environment inspired by real protist biology.

R pipeline for analyzing temperature and CO₂ interactive effects on protist community traits in boreal peatlands using SPRUCE experiment data

Code to support data analysis for manuscript (doi.org/10.1101/2024.05.12.593719)

Contains scripts for biodiversity assessments of European lakes

data, code and results from Cerini F., O’Brien DA., Wolfe E., Besson M. and Clements CF. 2023. Phenotypic response to different predator strategies can be mediated by temperature: high-resolution data from protist microcosms.

Salinity as a driver of speciation in free-living dinoflagellates

Code and plots for the paper of Jauss & Nowack et al., 2021: https://doi.org/10.1016/j.ejop.2021.125805