raxml-ng

snpick is a fast and memory-efficient Rust-based SNP extraction tool designed to handle large genomic alignments with minimal RAM usage and high-speed performance.

This pipeline automates the process of generating phylogenetic trees from sequence data, specifically designed for high-throughput and efficient analysis.

RAxML-ng is able to handle hardware failures when run with a failure mitigating MPI implementation (e.g. ULFM).

A pipeline to reconstruct a species tree with RaxML, from Single-Copy Orthologues (SCOs) identified by OrthoFinder.

This project performs an automated phylogenetic analysis of nucleotide sequences retrieved from NCBI. The pipeline includes sequence alignment, concatenation, phylogenetic inference (maximum likelihood, maximum parsimony, and Bayesian), and formatting for visualization.

A Nextflow pipeline to generate a phylogenetic tree from SKA alignment