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fix: point Cortex science projects at grouped checkouts #40

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Merged
Jammy2211 merged 1 commit into from
Sep 19, 2026
Merged

fix: point Cortex science projects at grouped checkouts #40

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4 changes: 2 additions & 2 deletions dashboard.html
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Expand Up @@ -399,7 +399,7 @@ <h3>ic50_workspace — EP against the graphical joint fit on IC50 dose-response
</section>
<section class="project">
<h3>autolens_inference — Do the PyAutoLens inference backends agree on the HST SLaM posterior</h3>
<p class="muted">active · both · <a href="https://github.com/PyAutoLabs/autolens_inference/issues/4">autolens_inference#4</a> · <a href="https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/autolens_inference.md">projects/autolens_inference.md</a> · local <span class="pathchip">/home/jammy/Code/PyAutoLabs/autolens_inference</span> · RAL <span class="pathchip">/mnt/ral/jnightin/autolens_inference</span></p>
<p class="muted">active · both · <a href="https://github.com/PyAutoLabs/autolens_inference/issues/4">autolens_inference#4</a> · <a href="https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/autolens_inference.md">projects/autolens_inference.md</a> · local <span class="pathchip">/home/jammy/Code/PyAutoLabs/lens/autolens_inference</span> · RAL <span class="pathchip">/mnt/ral/jnightin/autolens_inference</span></p>
<p><b>Now</b></p>
<p>The four A100 base legs are done (dense and sparse, seeds 0-1, all five stages): sparse costs 1.5x dense and buys nothing measurable, and at the same seed the two routes agree to 0.0-0.6 sigma while seeds of the SAME leg disagree by up to 0.9 sigma and ~3 nats — so the slam_hst_base witness bands (2 nats, 0.2 sigma) are tighter than Nautilus's own seed reproducibility on this cell, which is a finding about the bands. Running now: the same chain with a 1250-vertex Hilbert/Delaunay source (343143 dense, 343145 sparse, seeds 0-1) on the A100. Next: pull both, compare seed-paired against slam_base, and decide whether the parity bands need rewriting before the four CPU legs are submitted.</p>
<p><b>Runs</b></p>
Expand All @@ -416,7 +416,7 @@ <h3>autolens_inference — Do the PyAutoLens inference backends agree on the HST
<li>2026-09-14 — <i>run</i> — 342799_[0-1] finished — wall 0:48: slam_hst_base: A100 leg, dense inversion, seeds 0-1, hpc/batch_gpu/submit_slam_hst_jax_gpu_dense (config hpc_a100_jax_gpu_dense_fp64); the 09-12 ask: one hardware type first, GPU; rate-probe 342695 tree m…</li>
</ul>
<p class="muted"><a href="https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/autolens_inference.md">full log</a></p>
<div class="task"><button class="copy" data-cmd="/cortex — resume autolens_inference: read PyAutoCortex projects/autolens_inference.md (Now, Runs, Log) and then /home/jammy/Code/PyAutoLabs/autolens_inference/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." aria-label="Copy the Claude command">📋</button><p>resume autolens_inference</p></div>
<div class="task"><button class="copy" data-cmd="/cortex — resume autolens_inference: read PyAutoCortex projects/autolens_inference.md (Now, Runs, Log) and then /home/jammy/Code/PyAutoLabs/lens/autolens_inference/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say." aria-label="Copy the Claude command">📋</button><p>resume autolens_inference</p></div>
</section>
<section class="project">
<h3>euclid_sersics — Why does the lens-light Sersic index pile up at the n=5 prior edge</h3>
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4 changes: 2 additions & 2 deletions dashboard.md
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Expand Up @@ -270,7 +270,7 @@ Next: pull the ladder and see where EP's cost and hill_coef width go as N grows;

### autolens_inference — Do the PyAutoLens inference backends agree on the HST SLaM posterior

active · both · [autolens_inference#4](https://github.com/PyAutoLabs/autolens_inference/issues/4) · [projects/autolens_inference.md](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/autolens_inference.md) · local `/home/jammy/Code/PyAutoLabs/autolens_inference` · RAL `/mnt/ral/jnightin/autolens_inference`
active · both · [autolens_inference#4](https://github.com/PyAutoLabs/autolens_inference/issues/4) · [projects/autolens_inference.md](https://github.com/PyAutoLabs/PyAutoCortex/blob/main/projects/autolens_inference.md) · local `/home/jammy/Code/PyAutoLabs/lens/autolens_inference` · RAL `/mnt/ral/jnightin/autolens_inference`

**Now**

Expand All @@ -294,7 +294,7 @@ The four A100 base legs are done (dense and sparse, seeds 0-1, all five stages):
<details><summary>📋 resume autolens_inference</summary>

```
/cortex — resume autolens_inference: read PyAutoCortex projects/autolens_inference.md (Now, Runs, Log) and then /home/jammy/Code/PyAutoLabs/autolens_inference/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say.
/cortex — resume autolens_inference: read PyAutoCortex projects/autolens_inference.md (Now, Runs, Log) and then /home/jammy/Code/PyAutoLabs/lens/autolens_inference/wiki/project/state.md and the assistant autolens_assistant's AGENTS.md; tell me where I left off and what I said I would do next. Submit nothing and log nothing until I say.
```

</details>
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8 changes: 4 additions & 4 deletions projects.yaml
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Expand Up @@ -47,7 +47,7 @@
# --------------------------------------------------------------------------- #
inference_programme:
remote: PyAutoLabs/autolens_profiling
local_path: /home/jammy/Code/PyAutoLabs/autolens_profiling
local_path: /home/jammy/Code/PyAutoLabs/lens/autolens_profiling
ral_root: /mnt/ral/jnightin/autolens_profiling
mirror: /mnt/c/Users/Jammy/Science/inference_programme
sync_cli: hpc/sync
Expand Down Expand Up @@ -263,7 +263,7 @@ ic50_workspace:

autolens_inference:
remote: PyAutoLabs/autolens_inference
local_path: /home/jammy/Code/PyAutoLabs/autolens_inference
local_path: /home/jammy/Code/PyAutoLabs/lens/autolens_inference
ral_root: /mnt/ral/jnightin/autolens_inference
mirror: none
sync_cli: hpc/sync
Expand Down Expand Up @@ -437,7 +437,7 @@ ic50_workspace:

autolens_inference:
remote: PyAutoLabs/autolens_inference
local_path: /home/jammy/Code/PyAutoLabs/autolens_inference
local_path: /home/jammy/Code/PyAutoLabs/lens/autolens_inference
ral_root: /mnt/ral/jnightin/autolens_inference
mirror: none
sync_cli: hpc/sync
Expand Down Expand Up @@ -597,7 +597,7 @@ ic50_workspace:

autolens_inference:
remote: PyAutoLabs/autolens_inference
local_path: /home/jammy/Code/PyAutoLabs/autolens_inference
local_path: /home/jammy/Code/PyAutoLabs/lens/autolens_inference
ral_root: /mnt/ral/jnightin/autolens_inference
mirror: none
sync_cli: hpc/sync
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